Detail information of GWHGAAEX004656/evm.TU.scaffold_151.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0251 | 8.00E-66 | Clathrin assembly protein AP180 and related proteins, contain ENTH domain |
| nr | gi|743773876|ref|XP_010917291.1| | 6.95E-115 | PREDICTED: putative clathrin assembly protein At1g25240 [Elaeis guineensis] |
| Swissprot | tr|Q9FRH3|CAP13_ARATH | 2.00E-66 | Putative clathrin assembly protein At1g25240 |
| trEMBL | tr|K3YHX6|K3YHX6_SETIT | 5.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si013845m} |
| TAIR | AT1G25240 | 8.00E-66 | ENTH/VHS/GAT family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000155 | 958557 | 960060 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004656
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07651.15 | ANTH | 38 | 319 | 1.80E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048268 | Biological Process | clathrin coat assembly |
| GO:0005543 | Molecular Function | phospholipid binding |
| GO:0030276 | Molecular Function | clathrin binding |
| GO:0005545 | Molecular Function | 1-phosphatidylinositol binding |
| GO:0030136 | Cellular Component | clathrin-coated vesicle |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.950 |
| SRR2545915 | Juvenile tuber | 0.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.530 |
| SRR5643514 | five period of Gastrodia elata | 3.020 | |
| SRR5643515 | five period of Gastrodia elata | 2.700 | |
| SRR5643524 | five period of Gastrodia elata | 3.130 | |
| SRR5643525 | five period of Gastrodia elata | 1.480 | |
| SRR5643528 | five period of Gastrodia elata | 1.870 | |
| SRR5643658 | five period of Gastrodia elata | 0.540 | |
| SRR5643659 | five period of Gastrodia elata | 0.940 | |
| SRR5643660 | five period of Gastrodia elata | 1.750 | |
| SRR5643661 | five period of Gastrodia elata | 1.240 | |
| SRR5643662 | five period of Gastrodia elata | 2.580 | |
| SRR5643663 | five period of Gastrodia elata | 2.350 | |
| SRR5643664 | five period of Gastrodia elata | 2.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.12 |
| Juven | Juvenile tuber | 2.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.80 | |
| Mother_Juven | Mother tuber of Juvenile | 3.51 |