Detail information of GWHGAAEX004657/evm.TU.scaffold_151.43


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG14571.00E-26RNA binding protein (contains RRM repeats)
nrgi|743766747|ref|XP_010913619.1|6.68E-137PREDICTED: RNA-binding protein with multiple splicing-like [Elaeis guineensis]
trEMBLtr|M0U1R8|M0U1R8_MUSAM2.00E-132Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P19610_001}
TAIRAT3G137001.00E-26RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000155961375995100-
Transcript Sequence

Network for GWHGAAEX004657

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_12162782.90E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.870
SRR2545915Juvenile tuber13.090
SRP108465SRR5643513five period of Gastrodia elata11.740
SRR5643514five period of Gastrodia elata12.460
SRR5643515five period of Gastrodia elata11.680
SRR5643524five period of Gastrodia elata12.300
SRR5643525five period of Gastrodia elata8.290
SRR5643528five period of Gastrodia elata8.770
SRR5643658five period of Gastrodia elata9.660
SRR5643659five period of Gastrodia elata10.450
SRR5643660five period of Gastrodia elata10.080
SRR5643661five period of Gastrodia elata11.920
SRR5643662five period of Gastrodia elata12.430
SRR5643663five period of Gastrodia elata11.160
SRR5643664five period of Gastrodia elata12.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.320
SRR6049655Rhizomagastrodiae_C368-T10_good_112.150
SRR6049656Rhizomagastrodiae_C368-T07_good_112.130
SRR6049657Rhizomagastrodiae_C368-T07_good_113.430
SRR6049658Rhizomagastrodiae_C368-T04_good_111.390
SRR6049659Rhizomagastrodiae_C368-T04_good_111.780
SRR6049660Rhizomagastrodiae_C368-T01_good_112.900
SRR6049661Rhizomagastrodiae_C368-T04_good_112.020
SRR6049662Rhizomagastrodiae_C368-T01_good_115.110
SRR6049663Rhizomagastrodiae_C368-T01_good_112.150
SRR6049664Rhizomagastrodiae_C368-T10_good_115.430
SRR6049665Rhizomagastrodiae_C368-T10_good_115.430
SRP279888GastroGastrodia elata tuber 17.10
JuvenJuvenile tuber16.77
Mother_GastroMother tuber of Gastrodia elata 13.34
Mother_JuvenMother tuber of Juvenile 14.72