Gene detail

Detail information of GWHGAAEX004658/evm.TU.scaffold_151.44

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|283781652\|ref\|YP_003372407.1\|	1.00E-21	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
KOG	KOG1187	2.00E-111	Serine/threonine protein kinase
nr	gi\|747047787\|ref\|XP_011069876.1\|	0	PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Sesamum indicum]
Swissprot	tr\|Q9LSC2\|Y3589_ARATH	4.00E-111	PTI1-like tyrosine-protein kinase At3g15890
trEMBL	tr\|B9T7X4\|B9T7X4_RICCO	0	Serine-threonine protein kinase, plant-type, putative {ECO:0000313\|EMBL:EEF28041.1}
TAIR	AT1G52540	2.00E-111	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000155	1083406	1085971	+

Transcript Sequence
>GWHTAAEX004658 ATATTTGATGGGAGGAGGAAAACACATACTGATAAGAGTCTGCTTATTTGGTCATCCCATTCCAAGTTGAGACGAAGCTCTCACAAGAGAAGATAAGAGATGGGCTCTGCTATGAGCTGCTGCGCAGAGGAAAAGGTTGTGGCCTCACAAGGATTTGTTGGTGGGGGTCCAGAAAGCTCGCCATGGAGGCTGTTTACGTACAAGGAGCTCCATGCAGCCACTAATGGCTTCAGCGAAGACTTTAAGCTGGGAGAAGGAGGATTTGGGAGTGTTTACTGGGGAAAAACTGCTGATGGCCTTCAGATTGCAGTGAAGAAGCTGAAAGCGATGAACTCGAAAGCTGAGATGGAGTTCGCAGTGGAGGTGGAGATACTGGGAAGGGTGAGGCACAAGAACCTGTTGGGGCTCAGAGGATATTGTGCAGGAGTTGATCACAGGCTTATTGTATATGACTACATGCCCAATCTCAGCCTGCTCTCCCATCTTCACGGCCAATTTGCCACCGAAATGCGCCTCGATTGGAAAAAGAGAATGAATGTCATCATTGGCTCTGCCAAAGGCCTCGTGTATCTGCACGAAGAGGCGAGCCCGCACATAATCCACCGGGACATAAAGGCTAGCAACGTGCTTCTGGACTCGAACTTCGAGCCCCTGGTGGCGGACTTTGGGTTCGCGAAGCTGATGCCGGAGGGGGTGAGCCACATGACAACGCGTGTGAAGGGGACCCTGGGTTACCTGGCCCCTGAGTACGCCATGTGGGGCAAGGTCTCCGAGGCCTGTGACGTCTACAGCTTCGGCATCCTCCTCCTCGAGCTTGTCTCCGGCCGCAAGCCCATCGAGCGCCTCCACGGCGGCCTTAAACGCACCATCACTGAATGGGCCGAGCCCCTCATCTCCTCTGGCCGCCTCTCCGACCTCGCCGACCCCCGCCTCGACGGCGACTTCGACCCCCCCGCCCTCCGCCGCATCCTCCACGCCGCCGCCCGCTGCGTCCAGTCCGACCCCCACCTCCGCCCCTCCATGTCCACCCTCCTTCGCATTCTCTCCGCCCCCGCCCTCGACCCCCCCTCTCCTCTCCTCCCCATCTCCGAGGCCGATGACCAAGATCACCCGCCCCACTGATTTATTCTCCATTTCTTAAGTAGCACAAATTTTTGTTATTTTATATATTTAACTACACAAAATACTTAAAATCGCTGAGTCAACCGAGTTATTGGCGGCTGTTCTATGATGGCGATCGAAGCAAGGAAGAGTTCAAAAATTGTGAAATGTATTTTTATAATCGTAGATAAATACTTTCTTTAGTGGATTTTTTAAATATAGTTTTTTTGGTAATTTACTGCAATGATAGTTTGATTCAAAAAAAGGCGAACAGTTTGTGAAAATAATGTAGTGTTATTTTTGGAACAATGAAATCTAAAACTTAT

Network for GWHGAAEX004658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	46	312	2.40E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	2.560
	SRR5643514	five period of Gastrodia elata	10.470
	SRR5643515	five period of Gastrodia elata	2.060
	SRR5643524	five period of Gastrodia elata	6.450
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.060
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.100
	SRR5643660	five period of Gastrodia elata	0.410
	SRR5643661	five period of Gastrodia elata	0.210
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.520
SRP279888	Gastro	Gastrodia elata tuber	0.02
	Juven	Juvenile tuber	0.23
	Mother_Gastro	Mother tuber of Gastrodia elata	0.20
	Mother_Juven	Mother tuber of Juvenile	0.15