Detail information of GWHGAAEX004661/evm.TU.scaffold_151.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427725307|ref|YP_007072584.1| | 1.00E-10 | Exonuclease RNase T and DNA polymerase III [Leptolyngbya sp. PCC 7376] |
| KOG | KOG0542 | 1.00E-113 | Predicted exonuclease |
| nr | gi|695061762|ref|XP_009419327.1| | 4.47E-140 | PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8W566|Y3514_ARATH | 3.00E-127 | Uncharacterized exonuclease domain-containing protein At3g15140 |
| trEMBL | tr|I1I3F0|I1I3F0_BRADI | 2.00E-138 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G22650.1} |
| TAIR | AT3G15140 | 1.00E-113 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000155 | 1169407 | 1207155 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004661
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00929.23 | RNase_T | 120 | 286 | 2.10E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.560 |
| SRR2545915 | Juvenile tuber | 6.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.410 |
| SRR5643514 | five period of Gastrodia elata | 3.210 | |
| SRR5643515 | five period of Gastrodia elata | 3.870 | |
| SRR5643524 | five period of Gastrodia elata | 2.760 | |
| SRR5643525 | five period of Gastrodia elata | 6.720 | |
| SRR5643528 | five period of Gastrodia elata | 6.810 | |
| SRR5643658 | five period of Gastrodia elata | 8.500 | |
| SRR5643659 | five period of Gastrodia elata | 3.620 | |
| SRR5643660 | five period of Gastrodia elata | 4.190 | |
| SRR5643661 | five period of Gastrodia elata | 3.520 | |
| SRR5643662 | five period of Gastrodia elata | 3.460 | |
| SRR5643663 | five period of Gastrodia elata | 2.880 | |
| SRR5643664 | five period of Gastrodia elata | 3.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.52 |
| Juven | Juvenile tuber | 3.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.21 | |
| Mother_Juven | Mother tuber of Juvenile | 3.98 |