Detail information of GWHGAAEX004666/evm.TU.scaffold_151.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|332291610|ref|YP_004430219.1|1.00E-11small GTP-binding protein [Krokinobacter sp. 4H-3-7-5]
KOGKOG03934.00E-119Ras-related small GTPase, Rho type
nrgi|514711676|ref|XP_004952335.1|3.30E-126PREDICTED: rac-like GTP-binding protein 7-like [Setaria italica]
Swissprottr|Q6Z7L8|RAC7_ORYSJ2.00E-128Rac-like GTP-binding protein 7 (Precursor)
trEMBLtr|K3YVV3|K3YVV3_SETIT1.00E-126Uncharacterized protein {ECO:0000313|EnsemblPlants:Si018399m}
TAIRAT5G459704.00E-119RAC-like 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015512977281301493-
Transcript Sequence

Network for GWHGAAEX004666

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras81774.60E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04392RAC1 Ras signaling pathway map04014
Rap1 signaling pathwaymap04015
MAPK signaling pathwaymap04010
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
VEGF signaling pathwaymap04370
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
PI3K-Akt signaling pathwaymap04151
Phagosomemap04145
Focal adhesionmap04510
Adherens junctionmap04520
Tight junctionmap04530
Regulation of actin cytoskeletonmap04810
Toll-like receptor signaling pathwaymap04620
Natural killer cell mediated cytotoxicitymap04650
B cell receptor signaling pathwaymap04662
Fc epsilon RI signaling pathwaymap04664
Fc gamma R-mediated phagocytosismap04666
Leukocyte transendothelial migrationmap04670
Chemokine signaling pathwaymap04062
Pancreatic secretionmap04972
Neurotrophin signaling pathwaymap04722
Axon guidancemap04360
Axon regenerationmap04361
Osteoclast differentiationmap04380

Gene Ontology

GO term OntologyName
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.030
SRR2545915Juvenile tuber5.610
SRP108465SRR5643513five period of Gastrodia elata5.300
SRR5643514five period of Gastrodia elata7.120
SRR5643515five period of Gastrodia elata2.790
SRR5643524five period of Gastrodia elata3.790
SRR5643525five period of Gastrodia elata2.690
SRR5643528five period of Gastrodia elata1.520
SRR5643658five period of Gastrodia elata1.680
SRR5643659five period of Gastrodia elata3.090
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.090
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.140
SRR5643664five period of Gastrodia elata0.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.490
SRR6049655Rhizomagastrodiae_C368-T10_good_15.370
SRR6049656Rhizomagastrodiae_C368-T07_good_14.030
SRR6049657Rhizomagastrodiae_C368-T07_good_13.190
SRR6049658Rhizomagastrodiae_C368-T04_good_11.650
SRR6049659Rhizomagastrodiae_C368-T04_good_10.610
SRR6049660Rhizomagastrodiae_C368-T01_good_12.650
SRR6049661Rhizomagastrodiae_C368-T04_good_12.230
SRR6049662Rhizomagastrodiae_C368-T01_good_17.610
SRR6049663Rhizomagastrodiae_C368-T01_good_13.090
SRR6049664Rhizomagastrodiae_C368-T10_good_18.820
SRR6049665Rhizomagastrodiae_C368-T10_good_18.820
SRP279888GastroGastrodia elata tuber 0.09
JuvenJuvenile tuber0.57
Mother_GastroMother tuber of Gastrodia elata 0.57
Mother_JuvenMother tuber of Juvenile 0.41