Detail information of GWHGAAEX004683/evm.TU.scaffold_151.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3423 | 3.00E-63 | Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) |
| nr | gi|743892146|ref|XP_010911482.1| | 1.39E-79 | PREDICTED: transcription initiation factor TFIID subunit 10-like [Elaeis guineensis] |
| Swissprot | tr|O04173|TAF10_ARATH | 9.00E-64 | Transcription initiation factor TFIID subunit 10 |
| trEMBL | tr|A0A096UW57|A0A096UW57_WHEAT | 6.00E-74 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_7DS_088BAFEAD.2} |
| TAIR | AT4G31720 | 3.00E-63 | TBP-associated factor II 15 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000155 | 1857141 | 1864809 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004683
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03540.12 | TFIID_30kDa | 27 | 76 | 1.60E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03134 | TAF10 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.170 |
| SRR2545915 | Juvenile tuber | 50.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.840 |
| SRR5643514 | five period of Gastrodia elata | 46.730 | |
| SRR5643515 | five period of Gastrodia elata | 43.360 | |
| SRR5643524 | five period of Gastrodia elata | 51.130 | |
| SRR5643525 | five period of Gastrodia elata | 39.150 | |
| SRR5643528 | five period of Gastrodia elata | 20.380 | |
| SRR5643658 | five period of Gastrodia elata | 34.560 | |
| SRR5643659 | five period of Gastrodia elata | 37.840 | |
| SRR5643660 | five period of Gastrodia elata | 31.400 | |
| SRR5643661 | five period of Gastrodia elata | 39.930 | |
| SRR5643662 | five period of Gastrodia elata | 31.730 | |
| SRR5643663 | five period of Gastrodia elata | 36.500 | |
| SRR5643664 | five period of Gastrodia elata | 39.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 65.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 71.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 52.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 82.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 82.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 57.90 |
| Juven | Juvenile tuber | 80.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.33 | |
| Mother_Juven | Mother tuber of Juvenile | 81.82 |