Gene detail

Detail information of GWHGAAEX004685/evm.TU.scaffold_151.77

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|226229240\|ref\|YP_002763346.1\|	4.00E-24	putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27]
KOG	KOG1187	3.00E-151	Serine/threonine protein kinase
nr	gi\|743772286\|ref\|XP_010916448.1\|	0	PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X2 [Elaeis guineensis]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	9.00E-166	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|A0A067KA33\|A0A067KA33_JATCU	3.00E-170	Uncharacterized protein {ECO:0000313\|EMBL:KDP32982.1}
TAIR	AT1G18390	3.00E-151	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000155	1923152	1930220	-

Transcript Sequence
>GWHTAAEX004685 GAAATGAAAAATGAAATTCAAGTCTCGTTTCTTATAATATAATGAAAATAAAATAAAATAAAGTAATTTTAGAAGGCATCTAGATGAAGACTTACTAACCGAGAGTAATCGCTTATTTGACTCAAACCTTGACCCTTTAGATCCAAAGAAAATAATATTTGCATAAATACTTGGAGCCATATTACTTTAAAAAATAAAATTTGCATTAATACTTGGAGCCATATTACTTGCAATCCGACATCCAATATCTATTGGCCACGTGGATTTCCTTTTTTCAGTTTCCATTAAAATCTACCCGCTAAAATATATATATGCATTTTATTATTAAAGTACTCGTGGATATATATCTCATTATTATTAAAGCATTTAAAATTAACATTTAATTTAAAACATTATTAAAAATGATTAATTATCTAAAAAAACATAAGCAATATTTATTGAGGATTTCAGCCTTACTAAATTCTCCAGTCTTATAATAGAATCACCTCCATTTTGTAATTGCTACCGCCTGCCTGCGAAAATGCTTCAAAGGCGCTGGCAGTCGACCTCTCTAAGCCTCCTCCTCTTCTTCCTCCTCTTTCCGATATTTTCCTCGGAGCTCGTGGCCACCAACCCGTACTACTTAAATTGCTCCGATTATTTGCACTGCGGGGATCGCAGCGACATCGATATCATCTACCCTTTTCGCCTTCTCCAAAGCCCTAGTTACTGCGGCTACCCTGGTTACGAGCTCAGCTGCAACCCCGACCGCGAGCCCAAGTTAACCCTAAACCTTAAAGGAAAATACTACGTTGTGCAGCAGATCATTCATGAAGATGCGCTTCTCGTAGTCGTAGATCCGGATTTCATGACCTCCATCTGCCCTCAGATCTTCACCAACACTAGTATCAACACAGGTCTCTTCAATTACACCGATCGCGACAGTAATCTCACGGTTTACTACAACTGCAGATTCTCCGATACACCTCATGACCTTATAGAAATCGCTTGCCTCAGATCACATGAGTATCGCTCATACTACAGAATTGACGTTGGGCCGTCGGCTTTTCTTGACGATATTGCCGGCGGATGTGACTTGACGGCTGCCATGCCGGTCTATGGATTGCCGACAGGTAACTTAACGACCCAGGTGGATAGTATTCAGGAGGTGTTAAAAGAGGGGTTTGGATTGGGCTGGAGCTATCATCCGGAGTGGTGCCAAGGATGTATGAACTCAGGAGGTAGATGCGGATACAATGTTTCTCGTAGCGAAGATCAAACTTGTTTCTGCCCTGATGCTACTCGCAATAGTACCTGTCAGCTCGAAACAACAGCTAACAAACGAAACAAAGGGCTTTTAATAGGTCTTACTGTAGCCGGCTTTGGTGCAGCCATTATCAGCGCCTCCATCTGCTTCATCCTGTATTATACAAACGGGAAGAGAAAGAGGCGATCCTCCGGCTCAAACTCGACCTTTTTGGACAGCATCGTCTCCTTCAAACCGTTCTCGAAATCAGACCCCGAGCTGGGGCACTCTCTGAACGCTCCCATCTTCCGATACGAGGAACTGTACGAAGCCACGGATGGGTTCGACGAGTCCAGAGAGCTGGGCGACGGTGGCTTCGGCATAGTCTACAAAGGGAAGCTGAGGGACGGGCGAGTGGTGGCGGTGAAGCGGCTGTTTGAGAGCAACTACCGGCGGGTGGAGCAGTTCATGAACGAGGTGAAAATCCTGTCGGTGCTGCGGCACCAGAATCTGGTGAGCCTGTACGGGTGCACGTCCCGGCACAGCCGAGAGCTGCTGCTGGTGTACGAGTTCGTTCCGAACGGGACGGTGGCGGAGCACCTGAACGGGAAATCGTTGCTGCCGTGGGGGGTGCGGATGAGCATCGCCATCGAAACGGCGGAGGCGCTGAACTACCTGCACTCGGTGGAGCCGCAGATCATCCACCGGGACGTTAAATCCAGCAACATTCTTCTGGACAACGGCTTCGGCGTCAAGGTGGCAGATTTCGGGCTGTCCAGGCTGTTCCCTTTGGACGCCACCCACGTGTCGACGGCCCCACAGGGCACCCCGGGGTACGTGGACCCGGAGTACCATCAGTCGTATCAGCTGACGGACAGGAGCGACGTGTACAGCTTCGGGGTGGTTCTGATGGAGCTGATATCGTCGAAGCCGGCCGTGGATCTGGGCCGGAAGAGGAATGAGATTAACCTGGCCAGCATGGCGCTGGCCAGGATCCACAGCCGGGACCTGCACGACTTTGTGGACCAGACCCTCGGCTACCGCACCGATTGCGCTGTCAGGAGGATGATCGACCAGGTCGCCGAGCTCGGCTTCCGCTGCCTCCACTCCGATGCCGGGATGAGGCCCTGCATCAGAGAAGTTCTTCACGATCTCACACGCATCCAGAACGACTGTCCTGCTCCTGCTGCTGCCGCTGCTTCCGAGGAGAAAGCTCTCCCGCACTCCCCCAACGCGGTCACGGATGGCTGGGCCAGCGCCGGGACCACCCCGAACCCCAGCCTGTGAGTTTCTTTTCTGTATAGTCTCTGCATCTCTTATTTTTTTATTTATGTACATAGATCCCATTGATATATAACGAAGGACGTCGCTCATACATAGGTATAGATTGTTAATGGCCTTCTGGTTTAGTTGTTGAATTTTAAATTTTAAAGTACTGCTATGTCTAGAGTTCAAATTTTTATATTAATTTTGTTAAGATTTAAAAATAAAAAGAGTTATTGAACTTCATTCTGTTATCTTGGGTAATGCGTTTCTATTTTCTTATTGAAATTTTGCGAGATGGGATGAAGATTTGTTAATATCTGAGGAATCTTACATTGTTGTAATTGTTGCTTAAAATATATGGCAAGAAAGCAACAGTATAATTTTTATGTTTCAAATGACTTACATTATTACTGTTAAGAATATAATTTATCTGTTTATAACGAG

Network for GWHGAAEX004685

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.5	GUB_WAK_bind	42	144	1.60E-08
PF14380.5	WAK_assoc	179	252	1.30E-14
PF00069.24	Pkinase	351	618	1.30E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_WAK_LRK10L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity
GO:0030247	Molecular Function	polysaccharide binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.390
SRP064423	SRR2545915	Juvenile tuber	39.390
SRP108465	SRR5643513	five period of Gastrodia elata	49.920
	SRR5643514	five period of Gastrodia elata	46.260
	SRR5643515	five period of Gastrodia elata	55.730
	SRR5643524	five period of Gastrodia elata	53.990
	SRR5643525	five period of Gastrodia elata	92.460
	SRR5643528	five period of Gastrodia elata	72.670
	SRR5643658	five period of Gastrodia elata	131.280
	SRR5643659	five period of Gastrodia elata	66.420
	SRR5643660	five period of Gastrodia elata	68.800
	SRR5643661	five period of Gastrodia elata	77.950
	SRR5643662	five period of Gastrodia elata	74.750
	SRR5643663	five period of Gastrodia elata	88.620
	SRR5643664	five period of Gastrodia elata	91.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	47.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	60.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.640
SRP279888	Gastro	Gastrodia elata tuber	118.45
	Juven	Juvenile tuber	72.82
	Mother_Gastro	Mother tuber of Gastrodia elata	117.84
	Mother_Juven	Mother tuber of Juvenile	215.69