Gene detail

Detail information of GWHGAAEX004698/evm.TU.scaffold_151.109

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1278	Endosomal membrane proteins, EMP70
nr	gi\|743811218\|ref\|XP_010929109.1\|	PREDICTED: transmembrane 9 superfamily member 11-like [Elaeis guineensis]
Swissprot	tr\|Q9FYQ8\|TMN11_ARATH	Transmembrane 9 superfamily member 11 {ECO:0000305} (Precursor)
trEMBL	tr\|F6HCJ7\|F6HCJ7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49942.1}
TAIR	AT5G35160	Endomembrane protein 70 protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000155	2316106	2318663	-

Transcript Sequence
>GWHTAAEX004698 AATCAAATTCGCTCTCATTCTCTTTCTCTGCGCGGTCTATTCCGCCATTGATCTCTTTCAGATCTGAGATCCGTGACTCCTCTCTCTCTCTCTCTCTGCGGCCTCTTTTCCACCCTTGCCGGTTCTCCTTCGGATCTGAGATCTGTTGATCATCTCTCCAAACTCTATCTTCTTCAACTCTTCTCGTCGGCCTCTGATCTATTTGATCCGATGCAGTCCCCGCCGCCAAGATCATCCGTCGGTTTCGTCTTCCTCCTCTTTGTCCTCCTCGCATCCACGCTATCCCATGGATTCTATCTTCCAGGAAGCTATCCCCACAAGTACCAGATCGGCGACCCCCTCTCCGTAAAGGTGAACTCTCTCACTTCTATTGACACGGAGATGCCCTTCGGCTACTACTCCCTCCCCTTCTGCCGACCACTCGAGGGCATCAAGGATTCCGCCGAGAACCTCGGCGAGATCCTCATGGGAGATCGCATCGAGAACTCTCCCTATCGCTTTCGCATGTTCACAAACGAGTCCGACCTTCTTCTCTGCCGCACAGATCCCCTCTCCCCTGCCGATCTTTCCCTTCTCAAGAAGCGAATCGATGAGATGTACCAGGTTAATGTTCTCCTCGAAAATCTTCCTGCTATTCGCTACACGACGAAGGACGATCTCGTTCTCCGGTGGACCGGTTACCCCATCGGCGTTCGCGTTGGTGATTCCCATTTCATCTTCAACCACCTCAAGTTCACCGTTCTTGTCCATAAATACGAGGAGCCTGCAACCGTAGCTGCTGCATCCTCCGATTCGGCTATTGGAGGTGGCGGTAACCAAGACGCCCCAGGTTACATGGTGGTCGGATTTGAGGTAATTCCCTGCAGCTACCAACACGACACCGAGTCAATAAAAAATCTCAAGATGTACGACAAGTACCCGACGAAGATCCAGTGCGAGCCTACCACCGTTGCTATGGCGGTGAAGGAGAAGCAGCCTCTGGTCTTCACCTACGAGGTCTCCTTTGTCGAGAGCGCCATCCGCTGGCCTTCTCGATGGGACGCTTATCTGAAGATGGAGGGCGCGAAGGTGCACTGGTTCTCAATTCTCAACTCCCTTATGGTGATTGCATTTCTCGCTGGAATAGTTCTCCTGATTTTACTCAGAACCGTTCGCCGTGACCTGACCCGTTACGAAGAACTTGACAAAGAGGCGCAGGCTCAGATGAGTGAGGAGCTTTCGGGGTGGAAGCTTGTTGTTGGGGACGTCTTCCGCGCTCCCTCTCACGCGACTCTGCTCTGTGTCATGATCGGAGATGGAGTGCAGATTCTCGGAATGGCAGTGGTGACTATATTGTTTGCCGCCCTGGGATTCATGTCTCCTGCCTCTCGAGGAACACTTGTTACCGGTATGATCTTCTTCTACCTGGTTCTTGGAATTTTAGCTGGATACGCAGCAGTGAGGCTTTGGAAGTCGGTCAAGTGCGGAGATCACTCCGGATGGATGTCTGTTTCATGGAAAGTCGCTTGCTTTTTCCCTGGTATAGCATTTCTGATACTAACGACTCTAAACTTCCTTCTTTGGGGAAGCCATAGCACTGGTGCTATTCCCTTTTCTCTTTTCGTCATATTACTGCTACTCTGGTTCTGCATCTCCGTCCCTCTGACCCTCGTTGGCGGTTACTTGGGCGCTAAGGCCCGCCATATTGAATTTCCTGTAAGAACAAACCAGATTCCTCGAGAAATCCCTCCCCAGAAATACCCATCCTGGCTTCTTGTTCTTGGCGCTGGCACTCTGCCATTTGGCACCCTGTTCATCGAGCTCTTCTTCATCATGTCCAGCCTGTGGATGGGCCGTGTCTACTATGTATTCGGATTCCTCTTCATTGTTCTAATCCTTCTTGTCGTTGTTTGCGCCGAGGTTTCTCTGGTGCTCTCTTACATGCATCTTTGTGTTGAGGATTGGAAGTGGTGGTGGAAATCATTCTTCTCCTCGGGATCCGTTGCAATCTACATATTCTTATACTCTATAAACTATCTCGTGTTTGATCTTAAGAGTTTAAGCGGTCCTGTCTCAGCCACTCTCTACCTTGGCTATTCTCTTTTTATGGTTGTGGCCATCATGCTGGCCACTGGTACTGTTGGCTTCCTTTCTTCTTTCTGGTTTGTGCATTACCTTTTCTCTTCAGTTAAGCTGGATTGAGTTTCCACCATTGCTGCAGGAGGAACGAGTTTCTTGAACAGAGATTGCATTTTAGAAAAAAACTGGTATTTTGTATCTTTTTTACCTCATTATTCTTTCTTGGCTGAAAAACTTTCATGTTAAGTAAAAGTACTATCTTTTCTAATTGAGTAGATGATATGTCATCTATCTTGCACCAAGTAATCTCGACATTTCCTCATCTTTTTTTTTATTAGTCAGTCTCAGTATGCACTTTGTTTTTATTAGACTTGCTTATAAATGAATTTTGAATTTATTTATAGCAATTGAATGTTTCGTAATTACTTTTTATTTAAAAAAATAATTGAGAGAAGGCTTATTGTTTGTGTTGATCAGCTATGTTAACAGGCATTTACTTA

Network for GWHGAAEX004698

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02990.15	EMP70	59	608	6.80E-181

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.530
SRP064423	SRR2545915	Juvenile tuber	52.530
SRP108465	SRR5643513	five period of Gastrodia elata	77.400
	SRR5643514	five period of Gastrodia elata	67.760
	SRR5643515	five period of Gastrodia elata	83.000
	SRR5643524	five period of Gastrodia elata	75.510
	SRR5643525	five period of Gastrodia elata	109.910
	SRR5643528	five period of Gastrodia elata	100.650
	SRR5643658	five period of Gastrodia elata	107.320
	SRR5643659	five period of Gastrodia elata	88.830
	SRR5643660	five period of Gastrodia elata	88.390
	SRR5643661	five period of Gastrodia elata	95.380
	SRR5643662	five period of Gastrodia elata	98.910
	SRR5643663	five period of Gastrodia elata	87.320
	SRR5643664	five period of Gastrodia elata	70.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	72.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	81.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	78.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	61.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	60.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	60.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	69.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	88.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	74.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	75.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	75.840
SRP279888	Gastro	Gastrodia elata tuber	64.30
	Juven	Juvenile tuber	55.10
	Mother_Gastro	Mother tuber of Gastrodia elata	73.86
	Mother_Juven	Mother tuber of Juvenile	71.19