Detail information of GWHGAAEX004701/evm.TU.scaffold_151.112
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743812507|ref|XP_010929433.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q9FLX6|PP430_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g52850, chloroplastic (Precursor) |
| trEMBL | tr|F6H6A6|F6H6A6_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47817.1} |
| trEMBL | tr|F6H6A6|F6H6A6_VITVI | 6.00E-62 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47817.1} |
| TAIR | AT5G52850 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000155 | 2338663 | 2341876 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004701
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 105 | 132 | 0.00014 |
| PF13041.5 | PPR_2 | 133 | 177 | 1.60E-08 |
| PF01535.19 | PPR | 209 | 233 | 0.044 |
| PF13041.5 | PPR_2 | 234 | 281 | 8.50E-09 |
| PF13041.5 | PPR_2 | 334 | 380 | 2.60E-09 |
| PF13041.5 | PPR_2 | 436 | 483 | 1.10E-07 |
| PF01535.19 | PPR | 513 | 539 | 0.022 |
| PF13041.5 | PPR_2 | 639 | 686 | 5.60E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.670 |
| SRR2545915 | Juvenile tuber | 0.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.030 |
| SRR5643514 | five period of Gastrodia elata | 0.630 | |
| SRR5643515 | five period of Gastrodia elata | 0.940 | |
| SRR5643524 | five period of Gastrodia elata | 0.580 | |
| SRR5643525 | five period of Gastrodia elata | 0.220 | |
| SRR5643528 | five period of Gastrodia elata | 0.190 | |
| SRR5643658 | five period of Gastrodia elata | 0.670 | |
| SRR5643659 | five period of Gastrodia elata | 0.900 | |
| SRR5643660 | five period of Gastrodia elata | 0.980 | |
| SRR5643661 | five period of Gastrodia elata | 1.130 | |
| SRR5643662 | five period of Gastrodia elata | 1.350 | |
| SRR5643663 | five period of Gastrodia elata | 1.070 | |
| SRR5643664 | five period of Gastrodia elata | 1.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.99 |
| Juven | Juvenile tuber | 2.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.55 | |
| Mother_Juven | Mother tuber of Juvenile | 1.82 |