Gene detail

Detail information of GWHGAAEX004702/evm.TU.scaffold_151.113

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4362	1.00E-176	Transcriptional regulator BRCA1
nr	gi\|743792545\|ref\|XP_010923708.1\|	0	PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Elaeis guineensis]
Swissprot	tr\|Q8RXD4\|BRCA1_ARATH	0	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog
trEMBL	tr\|M0TBE3\|M0TBE3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P29980_001}
TAIR	AT4G21070_2	1.00E-176	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000155	2357205	2371826	-

Transcript Sequence
>GWHTAAEX004702 GCTGCAATCATTTACGGTCTCTGTTAGGCAGCATCTCGCATTGTCTCTCTCCCCCGATCGGTGCGTTTCAGGTGGACGCGGAAGATGGATTTTGGTCACTTGGAGAAGATGGGGAGAGAACTGAAGTGCCCTATCTGCTTGAGCCTGCTGAAATCTGCAGTTTCTCTTACCTGCAATCACGTTTTCTGCAACTCTTGCATTGTGGAATCAATGAGGTCCATCTGCAATTGTCCAGTATGCAAAGTACCATTTCAGCGCAGAGAGGTTCGAGCTGCTCTCCATATGGATAACCTAGTAAGCATTTACAAGAGCATGGAATTTGCTTCAGGCTTGAACATACTTGCAACTCAAGTTTCCCCTCCCAAAAATTCTGAGAAACCTCTTCAAGCTGCTTATGATAAGGAAGCTCAAGCACCGGAGGGTGTGTTGTTGCCCCAAGAAAGTTCAAGGGGAAAGAGGACATCAAAAGGAATGAGAAAGAAAATGGCAAAGGCTGACCTTACGACTTCTATTTTAGGCCCACAAACTAGGCCCCCTTTTTCATCAAATAAAAGGATACATGTGACACCATACCCTGTCTCTGAGACACCAATACCACCAAAAAGGACCAGTAAGTTGGAAGCTTCAACTAATAATGGCATGGACAAAATTGAATCAGAGAATAACACCAAACTAGTTTGCATGAGGCCGGAGGAATTGACATTACAGCCGTTCTTTTGGTTGAAAGAGGTAAATGAAGAGGATGAAGGCTTAGAACAGGAGACCACCCAAGAAATGACCAGTTTAACTACACCGACAAATGCCCCATGTTTTAGTGATATCAAAGATTCTGATGATCATAATACTCCCAAGAAAATGACCCTTACATTGACAAGCAAGTATACTGCTCAAGAAGCTTTTGATAGTGAAATGTTCGAATGGACTCAAAGGGCTTGCTCACCTGAGCTCTTTTCAACGCCTCTAAAGAAACAGAAGACAGGTGGGAAAAGATTCAAGGGGATTCAGGAAGATAGAAGCAGAGAAATATCATCCGGCATTAACAACTATTCTTTAAATATTGAAAGCTCAAAATCTTTTAATCTAGATAAGAATCCTAAAGCCGAAAGAATCACATGCAAAAGTAATGGAGCTTTGAAGAAGAGACGCAAGCAAAATAAAGCCAAGAAACTGAATGAATCCTCCTATGAAACTGCTAGCATTTCCTTGAATGAAGATCATTCATTTGGCTCTTTTGAAATAGTGGAAGATTCCAGCCAGGAAAAGAATTTTCCAAAACAGAAATATCCTTTAAGGTCTACAAGGTATAAAAAGAGTTGCAAATCCTCTGTTCTTCACGTCAGAAATAACATGGGAAGCCGCTCTGGAAAATTTAAAGCATTAGCTGTTGCACCTATACTGCTTCCTGCTAAATCTGGGGAAGAAATCCACACCGAAGGCATGGAAGGTACATCTAGCCTAAACCTAGCAAAGTTATCTCATGGCAAGTCAACAGAAGTTACTAAGTGTGCAGATGTGCCGATTAAATGCCTGAACAGAACAAAGAAAACATTTAAATCTCCAAAACAGACCAAGAGGTTGACTTTGAACTGTACTGATTCGAAAACGTCAGATGAAAAGGCAAAGACTAGAGTTCAATTAGTGCGCTGTAAGAAAAATAGAGGCGAAAATTCTTCCAAAAAACAATCCACTGTAGATCAGAATAGCCAGATTGGTGTTTTAAAGCAAGATAAGCTGAAAATGCCGGACATGCAAAACATTTACGATTTTCCAGAACACGCTTCTCACAAAAAACAGCATCGTTCCACAAACGATGTTATGCAAGACAATCAGCCTTGTGTGACTGTACTGACGCGTTGTGTTTTATCGAGGTCCAAGGAGCTTTTGCATTCGACCGTTAATGATGTCTTACGAAACTATAAAAGTGACCAGTTACCAATTAGATGTGCTTTCTGTCACTCTTCCAATGATTCCGAGGTTTCTGGAGAGATAATGCACTATTGTGATGGTAAATCAGTCCCTACGGATTATCAAGGAGAGGTTAATGTGATTCATTCACACAAGAACTGCACAGAATGGGCTCCTGATGTATACTTCAAAGATGATTATGTCGTTAATCTCTCAACTGAACTAGCAAGAAGCAGGCGGATATCATGCAGCTGCTGTGGCTCCAAAGGAGCTGCTCTTGGATGCTTTGAGAAGAGTTGCCGCCGGAGCTTCCACTATCCTTGTGCCAAACAGACTCCAGAATGTCGTTGGGATATTGAAAACTTTGTGATGCTGTGTCCTTTGCATTCATCTTCCAAATTGCCAAGTGAGATGTCTGAAGTAGAAAAGTTAAACAGAAAGATATCTGCATCAAAAGGAAAAGTATCCCCACCTTCACAGCTCAAAGCAGCTGACGACAAGAGCGGCATGTGGGCATGGCCAGCTGGATTACCTTGCAAGTGGCTCCTTTGTTCCTCCGGTCTATCTGATGCTGAGAAGGAAATTTTATCAGAGTTTGTTAGGCTGACTGGCATAACAATATCAAAGGCATGGAGTTCAGCGGTCACGCATGTTATTACAACAACTGAGGAGAATGGAGCATGTAAAAGAACATTAAAGATTCTGATGGGTATTCTAGATGGAAAGTGGATATTAAGCATTGAGTGGATCAAAGCTTGTATGAAATCGAAGAAACCAGTTGATGAAGAAAAATATGAAATCACCGTTGATGTTCATGGAATACAAAATGGGCCTCGTCTTGGAAGAATGAGAGCTATTAATAAGGAGCCCAAACTCTTCAGTGGATTTTGGTTCTATTTATTCGGGGAATTTTTGCCTTCCTACAAGGGCTTTCTGCAGGATCTGATAACAGCGGCGACCGGAAAGGTGTTGCAACGCCGGCCAATTTCAAGGGAGTTTGCTGAGATGCTGAATGGTTCTTCAGGTACAACCTTTATTGTCTACAGTCTCAAGCTTCCAGAGAATAGTGACAACCAAGATGCTAAACTTATGGAGCACAGGAAAGCTGAAGCCATAGCTCTTGCTGAAGAGTGCAGAGCAATGGCTGTTGCAGATTCCTGGATCCTAGACTCCATTGCTGCTTCATCATTGCAAGTCCTTCCAATGTGAGGATGCATATTTCATTATTCTTATTATTATTATTATTATGAATATGATTATAATGAATATGCGGTCCTTAGTTTGTACAATAAATTTTGTAATTTTGAAGTATAGAAAATGCCTTGCCTTTTTGTGTAGTATTGATGTTAAAATAAGCTTGAAGTTATTGTAAGTGAAATTGCACAGGTAGGATTTCATTGAATAGGCAGGAAAACACTCAAATTGGTATTTAGCTATTTAGCTGAATTGCCATTAGCCTTCAG

Network for GWHGAAEX004702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13923.5	zf-C3HC4_2	14	52	3.20E-08
PF13771.5	zf-HC5HC2H	658	736	6.90E-10
PF00533.25	BRCT	792	861	1.50E-08

Protein Sequence

>GWHPAAEX004702
MDFGHLEKMGRELKCPICLSLLKSAVSLTCNHVFCNSCIVESMRSICNCPVCKVPFQRREVRAALHMDNLVSIYKSMEFASGLNILATQVSPPKNSEKPLQAAYDKEAQAPEGVLLPQESSRGKRTSKGMRKKMAKADLTTSILGPQTRPPFSSNKRIHVTPYPVSETPIPPKRTSKLEASTNNGMDKIESENNTKLVCMRPEELTLQPFFWLKEVNEEDEGLEQETTQEMTSLTTPTNAPCFSDIKDSDDHNTPKKMTLTLTSKYTAQEAFDSEMFEWTQRACSPELFSTPLKKQKTGGKRFKGIQEDRSREISSGINNYSLNIESSKSFNLDKNPKAERITCKSNGALKKRRKQNKAKKLNESSYETASISLNEDHSFGSFEIVEDSSQEKNFPKQKYPLRSTRYKKSCKSSVLHVRNNMGSRSGKFKALAVAPILLPAKSGEEIHTEGMEGTSSLNLAKLSHGKSTEVTKCADVPIKCLNRTKKTFKSPKQTKRLTLNCTDSKTSDEKAKTRVQLVRCKKNRGENSSKKQSTVDQNSQIGVLKQDKLKMPDMQNIYDFPEHASHKKQHRSTNDVMQDNQPCVTVLTRCVLSRSKELLHSTVNDVLRNYKSDQLPIRCAFCHSSNDSEVSGEIMHYCDGKSVPTDYQGEVNVIHSHKNCTEWAPDVYFKDDYVVNLSTELARSRRISCSCCGSKGAALGCFEKSCRRSFHYPCAKQTPECRWDIENFVMLCPLHSSSKLPSEMSEVEKLNRKISASKGKVSPPSQLKAADDKSGMWAWPAGLPCKWLLCSSGLSDAEKEILSEFVRLTGITISKAWSSAVTHVITTTEENGACKRTLKILMGILDGKWILSIEWIKACMKSKKPVDEEKYEITVDVHGIQNGPRLGRMRAINKEPKLFSGFWFYLFGEFLPSYKGFLQDLITAATGKVLQRRPISREFAEMLNGSSGTTFIVYSLKLPENSDNQDAKLMEHRKAEAIALAEECRAMAVADSWILDSIAASSLQVLPM

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K10683	BARD1	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.740
SRP064423	SRR2545915	Juvenile tuber	1.720
SRP108465	SRR5643513	five period of Gastrodia elata	3.940
	SRR5643514	five period of Gastrodia elata	3.600
	SRR5643515	five period of Gastrodia elata	2.570
	SRR5643524	five period of Gastrodia elata	3.040
	SRR5643525	five period of Gastrodia elata	3.150
	SRR5643528	five period of Gastrodia elata	1.010
	SRR5643658	five period of Gastrodia elata	2.480
	SRR5643659	five period of Gastrodia elata	2.260
	SRR5643660	five period of Gastrodia elata	2.380
	SRR5643661	five period of Gastrodia elata	2.550
	SRR5643662	five period of Gastrodia elata	1.990
	SRR5643663	five period of Gastrodia elata	2.760
	SRR5643664	five period of Gastrodia elata	2.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.320
SRP279888	Gastro	Gastrodia elata tuber	8.46
	Juven	Juvenile tuber	4.24
	Mother_Gastro	Mother tuber of Gastrodia elata	2.56
	Mother_Juven	Mother tuber of Juvenile	2.10