Gene detail

Detail information of GWHGAAEX004703/evm.TU.scaffold_151.115

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|148655047\|ref\|YP_001275252.1\|	3.00E-21	WD-40 repeat-containing protein [Roseiflexus sp. RS-1]
KOG	KOG0266	0	WD40 repeat-containing protein
nr	gi\|743805097\|ref\|XP_010927352.1\|	0	PREDICTED: protein TOPLESS [Elaeis guineensis]
Swissprot	tr\|Q94AI7\|TPL_ARATH	0	Protein TOPLESS
trEMBL	tr\|M0SMK9\|M0SMK9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P09920_001}
TAIR	AT1G15750	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000155	2412288	2429407	+

Transcript Sequence
>GWHTAAEX004703 ATGTCGTCTCTTAGCAGGGAATTAGTTTTTTTAATCCTGCAGTTCCTAGACGAAGAGAAGTTCAAGGACACGGTGCACAAGCAAGTTTCTTTTTTCATGCTGGAGCATGAATCTGGCTTTTACTTCAACATGAAGTATTTTGAGGACGAGGTTCACAATGGTAACTGGGACGAAGTGGAGAAGTACCTCTCTGGTTTTACCAAGGTCGATGACAACCGATATTCTATGAAAATTTTCTTTGAAATCAGGAAGCAGAAGTATCTCGAAGCGTTGGATAAGCATGAACGATCCAAGGCTGTGGACATACTTGTAAAGGATCTGAAAGTCTTCGCCTCATTTAATGAGGAGCTTTTCAAGGAAATTACACAACTTTTGACTATGGAAAATTTTAGGGAAAATGAACAACTCTCCAAATATGGGGACACAAAATCAGCAAGGACAATAATGCTAGTTGAGCTTAAGAAACTAATTGAAGCAAATCCATTGTTCCGCGACAAGTTGCAGTTTCCCAACCTAAAAAGCTCACGGTTGCGCACCCTCATTAATCAAAGTTTAAACTGGCAACACCAGCTCTGCAAAAATCCTAGGCCAAATCCTGATATAAAAACTCTTTTTATTGATCATTCTTGTGGACAACAAAATGGTACACGTGTCCCATCTCCAGCAAACAACCCTCTGCTAGGATCCATACCCAAAGCAGCTGGCGCTTTTCCCCCTCTAGGTGCACATGGGCCTTTTCAACAAGTACCAGCATCTGTTCCTATGCCTTTAGCTGCTTGGATGTCAAACCCACCAGCTGTCACTCATCCTGCAGTTTCGGTTGGCCCCATGGGATTTGCAACTACTGCAAACCCTTCCACAATCTTGAAGCATCCAAGGACTCCTTCATCAGCCAATCCAGCTATGGATTATACGTCAGGAGATTCTGATCACATAGCAAAGAGAAGTAGAACTATCGGAGTCTCTGATGAGGTGAATCTGACTGTGAACCCATTGCCAGTTTCTTTTACTCAAAACAACAGTCAGAATATGTATAATCCAGATGACTTGCCAAAGGCTGTAGCCCGATCCCTAAATCAGGGATCAACTCCAATGAGCATGGATTTCCATCCTATTCAGCGAACTATTCTTCTTGTTGGCACCAATGTCGGTGATATTGGGCTGTGGGATATTGGAATTAGGGAGAGACTGGTTCTCAAGAATTTTAAAGTTTGGGAACTTGGTGCATGCTCATTGCCCCTTCAGACTGCTTTAGTTAAAGATCCAGATGTGTCAGTTAACCGCATAATATGGAGTCCAGATGGCAATTTGTTTGGCGTTGCTTACTCCAAGCATATTGTTCAAGTATATTCCTATTATGGGGGTAATGATATCAGGCAGCATTTGGAGATTGATGCCCACATCGGAGGTGTTAATGATATTGCATTTTCAACTCCAAATAAACAACCATGCATAGTAACTTGTGGAGATGACAAAATGATTAAGGTATGGGATGCAACTACAGGGGGTAAGCTCTACACATTTGAAGGTCATGATGCGCCCGTGTACTCTATTTGCCCTCATCACAAGGAAAGCATTCAGTTCATTTTTTCAACGGCTATAGATGGGAAGATAAAAGCATGGCTATATGATAACTTGGGATCTAGAGTTGATTATGATGCCCCAGGACATTGGTGCACTACCATGGCATATAGTGCTGATGGTTCAAGACTTTTTTCTTGCGGAACGAGCAAAGAAGGTGAATCACACATTGTTGAGTGGAATGAAAGTGAAGGGGCTGTAAAGAGAACATATCAAGGGTTCCATAAACGTTCCTTGGGTGTAGTACAGTTTGATACCACCAGGAATCGGTTCTTAGCTGCTGGTGATGATTTTCTGATTAAGTTCTGGGATATGGACAACACCAATCTCTTAACAACTGTTGATCTTGAGGGTTGCCTTCCTGCAAGTCCAAGGATACGCTTTAACAAAGAAGGTACCTTGTTGGCTGTATCTGCACATGACAACGGTATTAAAATATTAGCAAATGCTGATGGATTAAGATTGCTTCGGACATTTGATAATCGCACATTTGATGTTCCAAGAACAGTTTCAGAAACTGTGATGAAGCCTATTGCAAATCCGTTGTCTGCTGCTGCAGCCACCAATGCTGCCTCTGTATCCAGTGCTACAACAACTGATAGAACCTCTTCAGCTGTCGCAGTAGGAATGAATGGAGATAACAGAAACATGGTGGATGTGAAGCCTAGATTAACTGATGAGCTCATGGATAAATCAAAGATTTGGAAGTTGACTGAAATTGGTGAACCAACTCAATGCAGATCTCTGCGGCTGATGGATAACATGAGATCAAGCAAGATACGCAGGTTAATTTATACAAATTCTGGGGTTGCTCTTTTGGCTTTAGCATCTAATGCCATTCACCTACTTTGGAAGTGGCCTCGCAATGAAAAGAATTCTACTGGAAAGTCAACTACAAGTGTTGCTCCTCAACTATGGCAACCACCAAGTGGTATATTAATGACTAATGATACAACGGATACGAATCAAGAGGAAGCAGTCCCCTGTTTTGCGCTATCAAAGAATGATTCTTATGTCATGTCTGCTTCAGGGGGGAAAATTTCTTTATTCAATATGATGACTTTTAAGATTATGACCACTTTTATGCCTCCGCCACCTGCCGCTACATTTCTTGCATTCCATCCCCAAGATAATAATATAATTGCAATTGGAATGGATGATTCCACAATCCAAATATATAATGTTAGAGTTGATGAGGTTAAAAGCAAACTTAGAGGCCACTCAAAAAGAATAACTGGCCTTGCCTTTTCACATCCGCTAAATGTGCTGGTTTCATCTGGTGCTGATGGTCAGATATGCGTATGGGGTACTGATGTATGGGAAAAGCTGAGGAGCAGGTTCTTACAAATTCCAGCTGGACGAACTCCTACTGCTGTTTCGGACACTCGTGTTCAGTTTCACCAGGATCAGATTCATTTCCTCGCCATACATGAGACCCAGATTGCTCTGTACGAGGCAAATAAACTGGAGTGTATCAGACAGTGGGTACCTCGTGAAGCTTCTTCTCCGGCAATTTCTCATGCTAGTTTCTCTTGTGATAGCCAACTGATTTATGCCACCTTTTTGGATGCTACTGTATGCATTTTTAATGCATCAAACTTCAGACTTCAGTGCCGGATAAATTCAACCGCTTATCTTCCTGCTAACATTAGCTCAAACGTGTACCCTCTGGTGGTTGCGGCACACCCGTCGGAGCCGAACCAGTTCGCGTTGGGGCTGACAGATGGTGCCGTGCACGTCCTCGAACCACCGGAGCTCGACGGAAAGTGGGGCGCTTCTCCGCCCGCCGAGAACGGTTCCACTGGCAGCCTCCTTTCCTCAGCCCCGGTTGGAACAACCCCAGTCTCCGAACAGAGATAATTTTATCATATATATATATATACTAAAGTTCTGTGGATAATCATTTTCCAATGCGATCATCAGTTTCAAGGAACATTCAAACAGTGTTCGAGTTTTGAACTAACGCAGTCGCTGGAGGGCTGGAGGAACTGGACGCGTGCTTGTCCTGAAGCTCGCCGCTCTGTAAGCAATGCTTGC

Network for GWHGAAEX004703

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	464	498	0.0024
PF00400.31	WD40	930	962	0.00031

Protein Sequence

>GWHPAAEX004703
MSSLSRELVFLILQFLDEEKFKDTVHKQVSFFMLEHESGFYFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHERSKAVDILVKDLKVFASFNEELFKEITQLLTMENFRENEQLSKYGDTKSARTIMLVELKKLIEANPLFRDKLQFPNLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCGQQNGTRVPSPANNPLLGSIPKAAGAFPPLGAHGPFQQVPASVPMPLAAWMSNPPAVTHPAVSVGPMGFATTANPSTILKHPRTPSSANPAMDYTSGDSDHIAKRSRTIGVSDEVNLTVNPLPVSFTQNNSQNMYNPDDLPKAVARSLNQGSTPMSMDFHPIQRTILLVGTNVGDIGLWDIGIRERLVLKNFKVWELGACSLPLQTALVKDPDVSVNRIIWSPDGNLFGVAYSKHIVQVYSYYGGNDIRQHLEIDAHIGGVNDIAFSTPNKQPCIVTCGDDKMIKVWDATTGGKLYTFEGHDAPVYSICPHHKESIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPGHWCTTMAYSADGSRLFSCGTSKEGESHIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTRNRFLAAGDDFLIKFWDMDNTNLLTTVDLEGCLPASPRIRFNKEGTLLAVSAHDNGIKILANADGLRLLRTFDNRTFDVPRTVSETVMKPIANPLSAAAATNAASVSSATTTDRTSSAVAVGMNGDNRNMVDVKPRLTDELMDKSKIWKLTEIGEPTQCRSLRLMDNMRSSKIRRLIYTNSGVALLALASNAIHLLWKWPRNEKNSTGKSTTSVAPQLWQPPSGILMTNDTTDTNQEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKIMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLRGHSKRITGLAFSHPLNVLVSSGADGQICVWGTDVWEKLRSRFLQIPAGRTPTAVSDTRVQFHQDQIHFLAIHETQIALYEANKLECIRQWVPREASSPAISHASFSCDSQLIYATFLDATVCIFNASNFRLQCRINSTAYLPANISSNVYPLVVAAHPSEPNQFALGLTDGAVHVLEPPELDGKWGASPPAENGSTGSLLSSAPVGTTPVSEQR

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.700
SRP064423	SRR2545915	Juvenile tuber	47.930
SRP108465	SRR5643513	five period of Gastrodia elata	37.200
	SRR5643514	five period of Gastrodia elata	26.660
	SRR5643515	five period of Gastrodia elata	29.430
	SRR5643524	five period of Gastrodia elata	29.150
	SRR5643525	five period of Gastrodia elata	18.940
	SRR5643528	five period of Gastrodia elata	10.510
	SRR5643658	five period of Gastrodia elata	14.540
	SRR5643659	five period of Gastrodia elata	43.340
	SRR5643660	five period of Gastrodia elata	56.160
	SRR5643661	five period of Gastrodia elata	47.220
	SRR5643662	five period of Gastrodia elata	44.610
	SRR5643663	five period of Gastrodia elata	48.900
	SRR5643664	five period of Gastrodia elata	55.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	59.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	58.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	55.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.440
SRP279888	Gastro	Gastrodia elata tuber	101.40
	Juven	Juvenile tuber	79.97
	Mother_Gastro	Mother tuber of Gastrodia elata	69.09
	Mother_Juven	Mother tuber of Juvenile	54.27