Detail information of GWHGAAEX004713/evm.TU.scaffold_152.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19478.00E-102Leucine rich repeat proteins, some proteins contain F-box
nrgi|743864593|ref|XP_010904621.1|4.67E-169PREDICTED: F-box protein SKIP1 [Elaeis guineensis]
Swissprottr|Q9FDX1|SKIP1_ARATH2.00E-102F-box protein SKIP1
trEMBLtr|M0SQL1|M0SQL1_MUSAM1.00E-163Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P20480_001}
TAIRAT5G579008.00E-102SKP1 interacting partner 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001618643295972-
Transcript Sequence

Network for GWHGAAEX004713

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.620
SRR2545915Juvenile tuber11.940
SRP108465SRR5643513five period of Gastrodia elata22.540
SRR5643514five period of Gastrodia elata24.020
SRR5643515five period of Gastrodia elata27.520
SRR5643524five period of Gastrodia elata26.300
SRR5643525five period of Gastrodia elata26.060
SRR5643528five period of Gastrodia elata36.720
SRR5643658five period of Gastrodia elata34.540
SRR5643659five period of Gastrodia elata17.300
SRR5643660five period of Gastrodia elata19.690
SRR5643661five period of Gastrodia elata18.590
SRR5643662five period of Gastrodia elata23.640
SRR5643663five period of Gastrodia elata20.230
SRR5643664five period of Gastrodia elata22.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.880
SRR6049655Rhizomagastrodiae_C368-T10_good_148.860
SRR6049656Rhizomagastrodiae_C368-T07_good_124.910
SRR6049657Rhizomagastrodiae_C368-T07_good_123.410
SRR6049658Rhizomagastrodiae_C368-T04_good_122.130
SRR6049659Rhizomagastrodiae_C368-T04_good_125.320
SRR6049660Rhizomagastrodiae_C368-T01_good_120.800
SRR6049661Rhizomagastrodiae_C368-T04_good_121.730
SRR6049662Rhizomagastrodiae_C368-T01_good_120.910
SRR6049663Rhizomagastrodiae_C368-T01_good_121.460
SRR6049664Rhizomagastrodiae_C368-T10_good_135.150
SRR6049665Rhizomagastrodiae_C368-T10_good_135.150
SRP279888GastroGastrodia elata tuber 17.66
JuvenJuvenile tuber37.10
Mother_GastroMother tuber of Gastrodia elata 40.53
Mother_JuvenMother tuber of Juvenile 37.54