Detail information of GWHGAAEX004714/evm.TU.scaffold_152.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427714140|ref|YP_007062764.1| | 6.00E-96 | protein translocase subunit SecY [Synechococcus sp. PCC 6312] |
| nr | gi|720039592|ref|XP_010268356.1| | 0 | PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Nelumbo nucifera] |
| Swissprot | tr|Q38885|SCY1_ARATH | 0 | Preprotein translocase subunit SCY1, chloroplastic (Precursor) |
| trEMBL | tr|A0A059CRS6|A0A059CRS6_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW81067.1} |
| TAIR | AT2G18710 | 0 | SECY homolog 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000161 | 100162 | 176026 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004714
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00344.19 | SecY | 181 | 511 | 7.20E-81 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10956 | SEC61A | Protein export | map03060 |
| Protein processing in endoplasmic reticulum | map04141 | ||
| Phagosome | map04145 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015031 | Biological Process | protein transport |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.050 |
| SRR2545915 | Juvenile tuber | 4.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.210 |
| SRR5643514 | five period of Gastrodia elata | 2.910 | |
| SRR5643515 | five period of Gastrodia elata | 3.080 | |
| SRR5643524 | five period of Gastrodia elata | 3.180 | |
| SRR5643525 | five period of Gastrodia elata | 3.820 | |
| SRR5643528 | five period of Gastrodia elata | 3.290 | |
| SRR5643658 | five period of Gastrodia elata | 3.090 | |
| SRR5643659 | five period of Gastrodia elata | 3.860 | |
| SRR5643660 | five period of Gastrodia elata | 4.590 | |
| SRR5643661 | five period of Gastrodia elata | 3.290 | |
| SRR5643662 | five period of Gastrodia elata | 3.290 | |
| SRR5643663 | five period of Gastrodia elata | 4.090 | |
| SRR5643664 | five period of Gastrodia elata | 3.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.49 |
| Juven | Juvenile tuber | 2.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.59 | |
| Mother_Juven | Mother tuber of Juvenile | 3.31 |