Detail information of GWHGAAEX004715/evm.TU.scaffold_152.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428319759|ref|YP_007117641.1| | 2.00E-67 | multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC 7112] |
| KOG | KOG0519 | 0 | Sensory transduction histidine kinase |
| nr | gi|672132305|ref|XP_008789733.1| | 0 | PREDICTED: histidine kinase 5-like [Phoenix dactylifera] |
| Swissprot | tr|Q3S4A7|AHK5_ARATH | 0 | Histidine kinase 5 |
| trEMBL | tr|A0A061GIM2|A0A061GIM2_THECC | 0 | Histidine kinase cytokinin receptor isoform 1 {ECO:0000313|EMBL:EOY29253.1} |
| TAIR | AT5G10720 | 0 | histidine kinase 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000161 | 203540 | 235163 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004715
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00512.24 | HisKA | 368 | 431 | 4.10E-15 |
| PF02518.25 | HATPase_c | 479 | 657 | 6.20E-27 |
| PF00072.23 | Response_reg | 811 | 878 | 1.40E-13 |
| PF00072.23 | Response_reg | 898 | 943 | 6.20E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Others |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0016310 | Biological Process | phosphorylation |
| GO:0007165 | Biological Process | signal transduction |
| GO:0000155 | Molecular Function | phosphorelay sensor kinase activity |
| GO:0016772 | Molecular Function | transferase activity, transferring phosphorus-containing groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.090 |
| SRR2545915 | Juvenile tuber | 17.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.340 |
| SRR5643514 | five period of Gastrodia elata | 8.360 | |
| SRR5643515 | five period of Gastrodia elata | 8.420 | |
| SRR5643524 | five period of Gastrodia elata | 6.850 | |
| SRR5643525 | five period of Gastrodia elata | 10.800 | |
| SRR5643528 | five period of Gastrodia elata | 8.240 | |
| SRR5643658 | five period of Gastrodia elata | 10.650 | |
| SRR5643659 | five period of Gastrodia elata | 13.080 | |
| SRR5643660 | five period of Gastrodia elata | 12.460 | |
| SRR5643661 | five period of Gastrodia elata | 12.920 | |
| SRR5643662 | five period of Gastrodia elata | 10.380 | |
| SRR5643663 | five period of Gastrodia elata | 17.520 | |
| SRR5643664 | five period of Gastrodia elata | 13.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.13 |
| Juven | Juvenile tuber | 17.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.80 | |
| Mother_Juven | Mother tuber of Juvenile | 10.40 |