Detail information of GWHGAAEX004719/evm.TU.scaffold_152.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG14573.00E-22RNA binding protein (contains RRM repeats)
nrgi|672117786|ref|XP_008782084.1|3.14E-122PREDICTED: cell wall integrity protein scw1 [Phoenix dactylifera]
trEMBLtr|M0U1R8|M0U1R8_MUSAM3.00E-116Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P19610_001}
TAIRAT3G137003.00E-22RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000161373707403997-
Transcript Sequence

Network for GWHGAAEX004719

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11972581.10E-07
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.250
SRR2545915Juvenile tuber20.240
SRP108465SRR5643513five period of Gastrodia elata10.530
SRR5643514five period of Gastrodia elata8.850
SRR5643515five period of Gastrodia elata8.650
SRR5643524five period of Gastrodia elata7.690
SRR5643525five period of Gastrodia elata8.390
SRR5643528five period of Gastrodia elata6.550
SRR5643658five period of Gastrodia elata7.570
SRR5643659five period of Gastrodia elata12.900
SRR5643660five period of Gastrodia elata12.830
SRR5643661five period of Gastrodia elata12.190
SRR5643662five period of Gastrodia elata13.130
SRR5643663five period of Gastrodia elata12.460
SRR5643664five period of Gastrodia elata12.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.420
SRR6049655Rhizomagastrodiae_C368-T10_good_110.470
SRR6049656Rhizomagastrodiae_C368-T07_good_110.780
SRR6049657Rhizomagastrodiae_C368-T07_good_113.640
SRR6049658Rhizomagastrodiae_C368-T04_good_110.670
SRR6049659Rhizomagastrodiae_C368-T04_good_111.460
SRR6049660Rhizomagastrodiae_C368-T01_good_111.130
SRR6049661Rhizomagastrodiae_C368-T04_good_112.510
SRR6049662Rhizomagastrodiae_C368-T01_good_111.330
SRR6049663Rhizomagastrodiae_C368-T01_good_110.710
SRR6049664Rhizomagastrodiae_C368-T10_good_110.930
SRR6049665Rhizomagastrodiae_C368-T10_good_110.930
SRP279888GastroGastrodia elata tuber 6.61
JuvenJuvenile tuber8.50
Mother_GastroMother tuber of Gastrodia elata 4.67
Mother_JuvenMother tuber of Juvenile 5.96