Detail information of GWHGAAEX004721/evm.TU.scaffold_152.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|432330015|ref|YP_007248158.1|5.00E-141D-3-phosphoglycerate dehydrogenase [Methanoregula formicica SMSP]
KOGKOG00680D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily
nrgi|743809510|ref|XP_010928633.1|0PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Elaeis guineensis]
Swissprottr|O49485|SERA1_ARATH0D-3-phosphoglycerate dehydrogenase 1, chloroplastic (Precursor)
trEMBLtr|M0RFU7|M0RFU7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P06200_001}
TAIRAT4G342000D-3-phosphoglycerate dehydrogenase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000161474042483697-
Transcript Sequence

Network for GWHGAAEX004721

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00389.292-Hacid_dh863952.60E-36
PF02826.182-Hacid_dh_C1883631.00E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00058serA, PHGDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Pyrimidine metabolismmap00240
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0006564Biological ProcessL-serine biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287Molecular FunctionNAD binding
GO:0004617Molecular Functionphosphoglycerate dehydrogenase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.560
SRR2545915Juvenile tuber46.260
SRP108465SRR5643513five period of Gastrodia elata94.110
SRR5643514five period of Gastrodia elata92.100
SRR5643515five period of Gastrodia elata86.830
SRR5643524five period of Gastrodia elata96.480
SRR5643525five period of Gastrodia elata84.810
SRR5643528five period of Gastrodia elata83.060
SRR5643658five period of Gastrodia elata95.320
SRR5643659five period of Gastrodia elata96.160
SRR5643660five period of Gastrodia elata87.530
SRR5643661five period of Gastrodia elata122.000
SRR5643662five period of Gastrodia elata110.580
SRR5643663five period of Gastrodia elata102.050
SRR5643664five period of Gastrodia elata94.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1111.510
SRR6049655Rhizomagastrodiae_C368-T10_good_167.110
SRR6049656Rhizomagastrodiae_C368-T07_good_1106.030
SRR6049657Rhizomagastrodiae_C368-T07_good_184.210
SRR6049658Rhizomagastrodiae_C368-T04_good_158.580
SRR6049659Rhizomagastrodiae_C368-T04_good_147.520
SRR6049660Rhizomagastrodiae_C368-T01_good_177.890
SRR6049661Rhizomagastrodiae_C368-T04_good_182.680
SRR6049662Rhizomagastrodiae_C368-T01_good_1116.970
SRR6049663Rhizomagastrodiae_C368-T01_good_191.100
SRR6049664Rhizomagastrodiae_C368-T10_good_1103.660
SRR6049665Rhizomagastrodiae_C368-T10_good_1103.660
SRP279888GastroGastrodia elata tuber 89.48
JuvenJuvenile tuber74.58
Mother_GastroMother tuber of Gastrodia elata 31.77
Mother_JuvenMother tuber of Juvenile 45.95