Gene detail

Detail information of GWHGAAEX004727/evm.TU.scaffold_152.27

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428319161\|ref\|YP_007117043.1\|	5.00E-39	Choline dehydrogenase [Oscillatoria nigro-viridis PCC 7112]
KOG	KOG1238	0	Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family)
nr	gi\|743767171\|ref\|XP_010913841.1\|	0	PREDICTED: (R)-mandelonitrile lyase-like [Elaeis guineensis]
Swissprot	tr\|Q9SSM2\|MDLL_ARATH	0	(R)-mandelonitrile lyase-like (Precursor)
trEMBL	tr\|I1KG46\|I1KG46_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G00530.1}
TAIR	AT1G73050	0	Glucose-methanol-choline (GMC) oxidoreductase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000161	604904	607883	+

Transcript Sequence
>GWHTAAEX004727 AGAAGAAGAAGAAGAAGAAGGGTGTGTTCCGGGCTTCAAGAAAATAAAATGACGGAGAAATCTATTCTCTCCATCTCCGTCGTCCTCCTCATCGTCGCAGCATCGGCTTCTTTTCCGGAATACCTTCACTTGACGCGCGACGCGTCAACGTTCCCCGCACAGGAGAGCTACGACTACATCGTTGTGGGCGGAGGCACAGCCGGATGCCCAATGGCAGCCACGCTCTCCGACTCTCACACCGTCCTCCTCCTTGAGCGCGGCGGCGCTCCGCCGGAGTTCCCTTCCCTGTCCTTCCAAGAAGGATTCCTACCCACCCTCTCGCTCGGCAGCGGCGGCGGCGGTGGCGGACCTGCTGAGTCCTTCGTGTCCGAGGACGGCGTCCCCAACTCCCGCGGCCGCGTTCTGGGCGGCAGCAGCGCCATCAACGCCGGCTTCTACAGCCGCGCCCATCCCGCATTTTTCTCCCCTTCCTGGAACCTCTCCCTCGTCGAAGACTCCTACGCCTGGGTCGAGCGCTCCGTCGCGTTCCGCCCGGCCATCAGAACCTGGCAGTCCGCCCTCCTCCTCGGCCTTCTTGAAACCAATGTCACCCCCTTCAACGGATTTTCCCTCCACCACCTCCCCGGAACCAAGATCGGAGCCACCACCTTTGACTCCTCCGGTCGCCGCCACTCCGCCGCCGATCTCCTCGCCTCCGCTTCGCCCGCCAACATCCGCGTCGCCCTCCGCGCCTCCGCGCAGCGCATCCTCTTCCGAGGGCGATCGGCGGTCGGGGTACTCTACCGCGACCGCCTCGGCCGGTTCCACCGTGCTAGCACCAGGCCCGGCGGCGAGGTCCTCCTCTCTGCCGGAGCCCTCGGATCTTCCCAGCTCCTCCTTCTCAGCGGGATCGGCCCGCGGCAGTACCTCGCCTCTTGGGGAATCCCCGTAATTGCGCACAATCCAGCCGTTGGGGAGTTCCTCTACGACAACCCCCGCAACGGCATATCCATTATCCCCCCTTTCCCTCTCGACGATTCCCTCATACAGGTCGTCGGGATTCCTTCCGACGGCAGCGCTTTTCTCGAGGCAGCATCGACCGTCATTTCTCACGTCACCGTGGCCACAATCGTGGAGAAGGTTCCCGGCCCTTTGTCGGCGGGGTTCCTCCGGCTGGCATCCCTCGACGTCCGGGATGGACCCATCGTGCGATTCAATTACTTCGCAAGGCGCGAGGACGTGGACCGCTGCGTGGCCGGCCTACGGAGGATCGGGCGCCTGCTCGACAGCAGGACCATGCAGGCATTTAGGGTTGGGAATAAGAGGGCGGAGTTCTGGTACGTGGGAAGGGCGCTGCCGCGCAATCGATCGGACGCGGCGGCAATGGCGAATTTCTGCAGGAGAACGGTGGCGACGCTGTGGCATTATCACGGGGGCTGCGTCGTCGGCAGAGCGGTGGACGCGGAGAGGAAGGTGAAAGGAGTGCGGGCGCTTAGGGTTGTCGACGGCTCCACCTTCTCCGTCTCCCCCGGGACCAATCCGCAGGCTACGGTCATGATGATGGGAAGGTACATAGGGAAGAAGATAGTCGAAGAGAGAGAGCTGGCGCTTCTCGAGACCGCGGGAAAAAAGACCTGAGATTAGGCACTGAAAGGATGATAATCTTTGAATGAACATCTTTCTGGTGCTACTGATCCTATGTTTGATGGCTAATGCTCTTACACTACCATTCATTGGGAGTTTTGTGCTCTCTTGCACTGGATGATGCTACGTTGGATTGCTGATGATGTATTTGCCTGGAGAATTGCTGAGCTTGGTGATGTTTGGTTTCCTCAATTAATGAATGATATATTGTTGTTGAGCTCTGCCCATGTTAATTTGATGTTGTCTTGATACTGGTTAGAAGATGTTTGATTCTTCCTACCCTGAACTGTTGTGCCTTGATGATCTCCTGGCTTTAAAGCTGCTTGGTTGCATGTTGTGTGTTCGAGCTTGATGATTTTTAGATGAAACATTTCATAGAACTCCTGAATATTTTCTTTAAAGTTGTTATGTATTCTTTTAATTTTGAGTGTCTATTCCTTAAGTTTAATTTGGGATAAGTTTGGCTTGGGTGTGGTTGGACCTTTATATTTCTTTCTTCTATTTTTGCCTTTTAATTTTTGTTTGTTCTCTTTTTTTTATCTGTACGGCCAACCACACCAAATCATCCTACATCTCATTTTTTAATCAATAAAATTTGGATGGTTAAGGAAAAAAAAAGTTTAGACTGCTGCATCAGTTCTTC

Network for GWHGAAEX004727

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00732.18	GMC_oxred_N	41	138	5.10E-08
PF00732.18	GMC_oxred_N	203	308	4.70E-16
PF05199.12	GMC_oxred_C	361	500	1.00E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08248	MDL3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cyanoamino acid metabolism	map00460

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0050660	Molecular Function	flavin adenine dinucleotide binding
GO:0016614	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.570
SRP064423	SRR2545915	Juvenile tuber	2.630
SRP108465	SRR5643513	five period of Gastrodia elata	0.620
	SRR5643514	five period of Gastrodia elata	0.640
	SRR5643515	five period of Gastrodia elata	0.380
	SRR5643524	five period of Gastrodia elata	0.600
	SRR5643525	five period of Gastrodia elata	0.820
	SRR5643528	five period of Gastrodia elata	0.660
	SRR5643658	five period of Gastrodia elata	0.470
	SRR5643659	five period of Gastrodia elata	1.290
	SRR5643660	five period of Gastrodia elata	2.010
	SRR5643661	five period of Gastrodia elata	3.110
	SRR5643662	five period of Gastrodia elata	2.710
	SRR5643663	five period of Gastrodia elata	1.590
	SRR5643664	five period of Gastrodia elata	6.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.100
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.100
SRP279888	Gastro	Gastrodia elata tuber	3.71
	Juven	Juvenile tuber	1.05
	Mother_Gastro	Mother tuber of Gastrodia elata	2.22
	Mother_Juven	Mother tuber of Juvenile	1.96