Gene detail

Detail information of GWHGAAEX004728/evm.TU.scaffold_152.28_evm.TU.scaffold_152.30

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|392409009\|ref\|YP_006445616.1\|	FGGY-family pentulose kinase [Desulfomonile tiedjei DSM 6799]
KOG	KOG2517	Ribulose kinase and related carbohydrate kinases
nr	gi\|731408338\|ref\|XP_002275685.2\|	PREDICTED: FGGY carbohydrate kinase domain-containing protein [Vitis vinifera]
trEMBL	tr\|F6GXD1\|F6GXD1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44617.1}
TAIR	AT4G30310	FGGY family of carbohydrate kinase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000161	606804	667467	-

Transcript Sequence
>GWHTAAEX004728 TACCGATGAACTACACGCTGAGGGCGTCGTCATATATTAGGGTCCATTCGGACTTTAGATCTCCCCAACTTCCTCCCTCCGATCGACGGGTTGGGATCCCTGGGTCCATCGAGATGGCATCCGCTAGCTCGGAAAACCTCTCGCGAACCATCTTTCTTGGCGTCGACGTTGGGACTGGCAGCGCTAGAGCAGGTCTTTTCAATGAAGAAGGCAAGCTGTTGGGCACAGCAAGCAGTCCGATACAAATATGGAGGGAAGGAAACTGCATTGAGCAATCGTCTACAGATATCTGGCATGCAGTCTGCTCTGCTGTTAAAACAGCTTGCTCTTCAGCGGATGTTACAGCCGAGGAAATTACTGGCCTAGGATTTGCAGCAACTTGCTCTCTTGTTGCTGTTGATGCAGATGGATCTCCAGTTTCAGTTTCATTAAGTGGGGATGAACGAAGAAATATCATAGTATGGATGGATCATAGGGCCATAGAACAAGCTGAAAGAATCAATTCGCACAGCTCACCCGTGTTACAGTATTTGGGAGGGTCTGTTTCTCCCGAAATGCAAGTTCCCAAGCTTTTATGGGTTAAGGAAAATTTGAAAGAGTCCTGGTCTATGGCTTTCAGGTGGATGGATTTAAGCGACTGGCTGGCATATAGAGCAACAGGTGATGATACCCGGAGTTTGTGTACAACTTCTTGCAAGTGGGCTTATCTTGGACATGCACACATGCAATCTGCCAATGAGAAAGATTCTCGCAATATGGAAGCTTGTGGATGGGATGACGATTTTTGGGATGAAATTGGTTTGGGAGATGTTGTTGAAGGGAATCATGCAAAAATTGGCCGTAGTGTTGCTTTTCCGGGCTATCCATTGGGTTCTGGATTAACACCTTCTGCTGCATATGAGTTAGGTCTGCTGACTGGGACTCCCGTGGGAACATCACTGATTGATGCTCATGCTGGTGGTGTTGGTGTTATGAACAGTTTGTCTAATGCTGAGTTTCAATCTGCTGATAAGAAAGATATATGCTATCGCTTGGTATTAGTTTGCGGGACATCCACTTGCCATATGGCTGTTTCAAAAGACAAATTATTTGTCCCTGGGGTGTGGGGGCCATTCTGGTCAGCAATGATACCTGAATACTGGCTTACTGAAGGTGGGCAAAGTGCAACTGGGGCATTGCTTGATCACATTATTGAGAATCATGCTAGTGCTCCTCTTCTTGCTAATCATGCGGCATCACAAGGTAAATCTGTGTATGAGTTGTTGAACAATATCCTGGAATCAATGGTGCAGGACCTAAAGGTTCCGTTCCTTGCTGCATTGACTGAAGAGATGCACGTGCTTCCAGACTTCCATGGAAACAGATCACCAACTGCGGATGCAAAATCAAAGGGCATGGTTTGTGGTCTGACGCTAGATAGAAGTCAGCAGCAGTTGGCCCTTTTTTACCTTGCCACAATTCAGGGCATTGCATATGGTACTCGTCATATTGTGGAAAGATGCAACTCATATGGGCACAAGATAGACACACTGCTTGCATGCGGCGGATTAGCCAAAAACCTATTGTACATTCATGAGCATGCAGATATAGTTGGCTGCCCAGTAATTCTTCCAAGGGAAAACGAGTCTGTGCTTTTAGGTTCTGCCATCTTAGGAGCTGTTGCTGCTAAAAGATATCCCACCCTTCAGGACGCCATGTCTGTGTTGAATGCGGCTGGACAGGTGATCAGTCCCTGCGCGGATCCAAGAGTGAAAAGATATCATGACGCTAAGTATAAGATATTTCGTTCGCTTTACGAGCAGCAGCTCTCCTATCGATCCATCATGGCTGAAGCTTTGCAGCATCAATAGAGGAAAAGAGGCAGATAGATTGATGATTTTTTTTTAAAAATTAAATAAATGATTTATAAATTGTTTTTTGCAACATCTAAATAAATTGCTGTTATTTTCTTAAATTGAAATAAATTTGAGATATTATATCATATATCTATTTATATAGAAATAGAAATATTGAAAAAACTAAAAATAATAAAA

Network for GWHGAAEX004728

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00370.20	FGGY_N	50	227	5.00E-23
PF02782.15	FGGY_C	344	554	1.80E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0016773	Molecular Function	phosphotransferase activity, alcohol group as acceptor

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	55.140
SRP064423	SRR2545915	Juvenile tuber	67.050
SRP108465	SRR5643513	five period of Gastrodia elata	47.450
	SRR5643514	five period of Gastrodia elata	44.430
	SRR5643515	five period of Gastrodia elata	42.480
	SRR5643524	five period of Gastrodia elata	48.220
	SRR5643525	five period of Gastrodia elata	43.250
	SRR5643528	five period of Gastrodia elata	37.940
	SRR5643658	five period of Gastrodia elata	51.140
	SRR5643659	five period of Gastrodia elata	46.930
	SRR5643660	five period of Gastrodia elata	41.910
	SRR5643661	five period of Gastrodia elata	39.770
	SRR5643662	five period of Gastrodia elata	35.910
	SRR5643663	five period of Gastrodia elata	43.090
	SRR5643664	five period of Gastrodia elata	39.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	61.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	61.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	72.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	89.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	95.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	69.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	79.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	60.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	67.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.330
SRP279888	Gastro	Gastrodia elata tuber	59.27
	Juven	Juvenile tuber	72.38
	Mother_Gastro	Mother tuber of Gastrodia elata	76.06
	Mother_Juven	Mother tuber of Juvenile	94.68