Detail information of GWHGAAEX004729/evm.TU.scaffold_152.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|193214461|ref|YP_001995660.1| | 7.00E-21 | PAS/PAC sensor protein [Chloroherpeton thalassium ATCC 35110] |
| nr | gi|695044020|ref|XP_009409736.1| | 0 | PREDICTED: adagio-like protein 1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q5Z8K3|ADO1_ORYSJ | 0 | Adagio-like protein 1 |
| trEMBL | tr|A0A067KGL3|A0A067KGL3_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP35371.1} |
| TAIR | AT5G57360 | 0 | Galactose oxidase/kelch repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000161 | 694624 | 706433 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004729
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13426.6 | PAS_9 | 55 | 153 | 5.60E-14 |
| PF12937.6 | F-box-like | 211 | 252 | 7.10E-07 |
| PF13418.5 | Kelch_4 | 302 | 352 | 6.80E-11 |
| PF13418.5 | Kelch_4 | 353 | 405 | 1.50E-07 |
| PF13415.5 | Kelch_3 | 417 | 467 | 0.00013 |
| PF07646.14 | Kelch_2 | 526 | 574 | 8.70E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12115 | ZTL | Circadian rhythm - plant | map04712 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.360 |
| SRR2545915 | Juvenile tuber | 13.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.610 |
| SRR5643514 | five period of Gastrodia elata | 29.030 | |
| SRR5643515 | five period of Gastrodia elata | 32.920 | |
| SRR5643524 | five period of Gastrodia elata | 30.910 | |
| SRR5643525 | five period of Gastrodia elata | 36.550 | |
| SRR5643528 | five period of Gastrodia elata | 31.620 | |
| SRR5643658 | five period of Gastrodia elata | 28.700 | |
| SRR5643659 | five period of Gastrodia elata | 30.600 | |
| SRR5643660 | five period of Gastrodia elata | 34.220 | |
| SRR5643661 | five period of Gastrodia elata | 38.580 | |
| SRR5643662 | five period of Gastrodia elata | 40.460 | |
| SRR5643663 | five period of Gastrodia elata | 32.690 | |
| SRR5643664 | five period of Gastrodia elata | 43.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.96 |
| Juven | Juvenile tuber | 36.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.46 | |
| Mother_Juven | Mother tuber of Juvenile | 42.61 |