Detail information of GWHGAAEX004732/evm.TU.scaffold_152.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|328951326|ref|YP_004368661.1| | 2.00E-95 | alpha-glucosidase [Marinithermus hydrothermalis DSM 14884] |
| KOG | KOG1065 | 0 | Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 |
| nr | gi|672156296|ref|XP_008797841.1| | 0 | PREDICTED: alpha-xylosidase 1 [Phoenix dactylifera] |
| Swissprot | tr|Q9S7Y7|XYL1_ARATH | 0 | Alpha-xylosidase 1 (Precursor) |
| trEMBL | tr|K3XEA4|K3XEA4_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si000221m} |
| TAIR | AT1G68560 | 0 | alpha-xylosidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000161 | 728341 | 756141 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004732
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16863.4 | NtCtMGAM_N | 40 | 171 | 5.50E-34 |
| PF13802.5 | Gal_mutarotas_2 | 175 | 242 | 3.80E-07 |
| PF01055.25 | Glyco_hydro_31 | 263 | 754 | 1.10E-147 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH31 |
| Carbohydrate-Active enzymes Family | GH31 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.600 |
| SRR2545915 | Juvenile tuber | 33.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 69.840 |
| SRR5643514 | five period of Gastrodia elata | 47.390 | |
| SRR5643515 | five period of Gastrodia elata | 78.210 | |
| SRR5643524 | five period of Gastrodia elata | 77.410 | |
| SRR5643525 | five period of Gastrodia elata | 18.590 | |
| SRR5643528 | five period of Gastrodia elata | 52.250 | |
| SRR5643658 | five period of Gastrodia elata | 31.610 | |
| SRR5643659 | five period of Gastrodia elata | 45.440 | |
| SRR5643660 | five period of Gastrodia elata | 34.470 | |
| SRR5643661 | five period of Gastrodia elata | 42.440 | |
| SRR5643662 | five period of Gastrodia elata | 21.550 | |
| SRR5643663 | five period of Gastrodia elata | 32.840 | |
| SRR5643664 | five period of Gastrodia elata | 15.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.52 |
| Juven | Juvenile tuber | 12.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.79 | |
| Mother_Juven | Mother tuber of Juvenile | 15.07 |