Detail information of GWHGAAEX004737/evm.TU.scaffold_152.40


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|158341560|ref|YP_001522724.1|6.00E-22WD repeat-containing protein [Acaryochloris marina MBIC11017]
KOGKOG06469.00E-124WD40 repeat protein
nrgi|743763909|ref|XP_010912155.1|1.10E-175PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Elaeis guineensis]
Swissprottr|Q9M3B4|RID3_ARATH3.00E-124Protein ROOT INITIATION DEFECTIVE 3
trEMBLtr|A0A061FBK5|A0A061FBK5_THECC4.00E-156WD-repeat protein, putative isoform 1 {ECO:0000313|EMBL:EOY14426.1}
TAIRAT3G491809.00E-124Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000161797378801504+
Transcript Sequence

Network for GWHGAAEX004737

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD401141512.10E-06
PF00400.31WD401712060.11
PF00400.31WD402632981.00E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.550
SRR2545915Juvenile tuber32.300
SRP108465SRR5643513five period of Gastrodia elata31.270
SRR5643514five period of Gastrodia elata29.450
SRR5643515five period of Gastrodia elata26.120
SRR5643524five period of Gastrodia elata27.280
SRR5643525five period of Gastrodia elata25.610
SRR5643528five period of Gastrodia elata27.780
SRR5643658five period of Gastrodia elata24.490
SRR5643659five period of Gastrodia elata38.920
SRR5643660five period of Gastrodia elata34.690
SRR5643661five period of Gastrodia elata35.430
SRR5643662five period of Gastrodia elata36.560
SRR5643663five period of Gastrodia elata33.720
SRR5643664five period of Gastrodia elata37.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_136.880
SRR6049655Rhizomagastrodiae_C368-T10_good_134.820
SRR6049656Rhizomagastrodiae_C368-T07_good_143.550
SRR6049657Rhizomagastrodiae_C368-T07_good_138.700
SRR6049658Rhizomagastrodiae_C368-T04_good_133.960
SRR6049659Rhizomagastrodiae_C368-T04_good_134.460
SRR6049660Rhizomagastrodiae_C368-T01_good_138.580
SRR6049661Rhizomagastrodiae_C368-T04_good_134.880
SRR6049662Rhizomagastrodiae_C368-T01_good_147.650
SRR6049663Rhizomagastrodiae_C368-T01_good_143.530
SRR6049664Rhizomagastrodiae_C368-T10_good_148.240
SRR6049665Rhizomagastrodiae_C368-T10_good_148.240
SRP279888GastroGastrodia elata tuber 37.02
JuvenJuvenile tuber21.28
Mother_GastroMother tuber of Gastrodia elata 26.32
Mother_JuvenMother tuber of Juvenile 15.97