Detail information of GWHGAAEX004741/evm.TU.scaffold_152.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-46 | FOG: PPR repeat |
| nr | gi|695015613|ref|XP_009394687.1| | 2.51E-142 | PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FMF6|PP444_ARATH | 2.00E-46 | Pentatricopeptide repeat-containing protein At5g64320, mitochondrial (Precursor) |
| trEMBL | tr|M0SKW5|M0SKW5_MUSAM | 4.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03980_001} |
| TAIR | AT5G64320 | 8.00E-46 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000161 | 870532 | 872972 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004741
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 134 | 183 | 1.10E-10 |
| PF01535.19 | PPR | 207 | 236 | 0.00046 |
| PF13041.5 | PPR_2 | 239 | 288 | 2.40E-14 |
| PF13041.5 | PPR_2 | 309 | 356 | 7.10E-09 |
| PF13041.5 | PPR_2 | 377 | 426 | 3.10E-11 |
| PF01535.19 | PPR | 483 | 495 | 0.6 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.220 |
| SRR2545915 | Juvenile tuber | 7.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.610 |
| SRR5643514 | five period of Gastrodia elata | 12.050 | |
| SRR5643515 | five period of Gastrodia elata | 13.330 | |
| SRR5643524 | five period of Gastrodia elata | 13.200 | |
| SRR5643525 | five period of Gastrodia elata | 12.410 | |
| SRR5643528 | five period of Gastrodia elata | 8.530 | |
| SRR5643658 | five period of Gastrodia elata | 12.520 | |
| SRR5643659 | five period of Gastrodia elata | 28.570 | |
| SRR5643660 | five period of Gastrodia elata | 33.190 | |
| SRR5643661 | five period of Gastrodia elata | 24.130 | |
| SRR5643662 | five period of Gastrodia elata | 19.730 | |
| SRR5643663 | five period of Gastrodia elata | 27.010 | |
| SRR5643664 | five period of Gastrodia elata | 26.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.44 |
| Juven | Juvenile tuber | 21.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.74 | |
| Mother_Juven | Mother tuber of Juvenile | 13.13 |