Detail information of GWHGAAEX004744/evm.TU.scaffold_152.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|34498467|ref|NP_902682.1| | 8.00E-22 | serine carboxypeptidase [Chromobacterium violaceum ATCC 12472] |
| KOG | KOG1282 | 7.00E-104 | Serine carboxypeptidases (lysosomal cathepsin A) |
| nr | gi|743847092|ref|XP_010939013.1| | 9.34E-146 | PREDICTED: serine carboxypeptidase-like 18 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9C7Z9|SCP18_ARATH | 2.00E-104 | Serine carboxypeptidase-like 18 (Precursor) |
| trEMBL | tr|M0XL01|M0XL01_HORVD | 2.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_60972.4} |
| TAIR | AT3G12220 | 7.00E-104 | serine carboxypeptidase-like 16 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000161 | 904415 | 979111 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004744
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00450.21 | Peptidase_S10 | 37 | 472 | 6.30E-101 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004185 | Molecular Function | serine-type carboxypeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 119.150 |
| SRR2545915 | Juvenile tuber | 40.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 46.750 |
| SRR5643514 | five period of Gastrodia elata | 39.620 | |
| SRR5643515 | five period of Gastrodia elata | 33.000 | |
| SRR5643524 | five period of Gastrodia elata | 41.500 | |
| SRR5643525 | five period of Gastrodia elata | 50.310 | |
| SRR5643528 | five period of Gastrodia elata | 29.530 | |
| SRR5643658 | five period of Gastrodia elata | 34.400 | |
| SRR5643659 | five period of Gastrodia elata | 18.710 | |
| SRR5643660 | five period of Gastrodia elata | 15.700 | |
| SRR5643661 | five period of Gastrodia elata | 18.000 | |
| SRR5643662 | five period of Gastrodia elata | 9.100 | |
| SRR5643663 | five period of Gastrodia elata | 14.780 | |
| SRR5643664 | five period of Gastrodia elata | 10.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 28.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.23 |
| Juven | Juvenile tuber | 53.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.76 | |
| Mother_Juven | Mother tuber of Juvenile | 55.07 |