Detail information of GWHGAAEX004747/evm.TU.scaffold_152.51


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13273.00E-150Copine
nrgi|695003436|ref|XP_009385432.1|4.24E-179PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LY87|RGLG2_ARATH7.00E-151E3 ubiquitin-protein ligase RGLG2
trEMBLtr|M0S5D8|M0S5D8_MUSAM2.00E-179Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P05470_001}
TAIRAT5G144203.00E-150RING domain ligase2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000016110126091019035-
Transcript Sequence

Network for GWHGAAEX004747

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07002.15Copine993122.70E-73
PF13920.5zf-C3HC4_33904303.90E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.380
SRR2545915Juvenile tuber30.200
SRP108465SRR5643513five period of Gastrodia elata33.130
SRR5643514five period of Gastrodia elata48.190
SRR5643515five period of Gastrodia elata41.610
SRR5643524five period of Gastrodia elata41.170
SRR5643525five period of Gastrodia elata16.660
SRR5643528five period of Gastrodia elata17.470
SRR5643658five period of Gastrodia elata14.770
SRR5643659five period of Gastrodia elata12.350
SRR5643660five period of Gastrodia elata14.830
SRR5643661five period of Gastrodia elata13.760
SRR5643662five period of Gastrodia elata12.720
SRR5643663five period of Gastrodia elata8.550
SRR5643664five period of Gastrodia elata12.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.920
SRR6049655Rhizomagastrodiae_C368-T10_good_173.590
SRR6049656Rhizomagastrodiae_C368-T07_good_134.530
SRR6049657Rhizomagastrodiae_C368-T07_good_133.110
SRR6049658Rhizomagastrodiae_C368-T04_good_134.070
SRR6049659Rhizomagastrodiae_C368-T04_good_131.850
SRR6049660Rhizomagastrodiae_C368-T01_good_121.780
SRR6049661Rhizomagastrodiae_C368-T04_good_126.090
SRR6049662Rhizomagastrodiae_C368-T01_good_126.490
SRR6049663Rhizomagastrodiae_C368-T01_good_123.700
SRR6049664Rhizomagastrodiae_C368-T10_good_155.310
SRR6049665Rhizomagastrodiae_C368-T10_good_155.310
SRP279888GastroGastrodia elata tuber 24.40
JuvenJuvenile tuber16.69
Mother_GastroMother tuber of Gastrodia elata 35.38
Mother_JuvenMother tuber of Juvenile 45.64