Detail information of GWHGAAEX004750/evm.TU.scaffold_152.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|57641568|ref|YP_184046.1| | 1.00E-56 | exosome complex RNA-binding protein Rrp42 [Thermococcus kodakarensis KOD1] |
| KOG | KOG1614 | 1.00E-151 | Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 |
| nr | gi|695050870|ref|XP_009413441.1| | 0 | PREDICTED: protein RRP45A-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9M209|CER7_ARATH | 3.00E-152 | Protein ECERIFERUM 7 |
| trEMBL | tr|M0TQZ1|M0TQZ1_MUSAM | 2.00E-179 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P16380_001} |
| TAIR | AT3G60500 | 1.00E-151 | 3'-5'-exoribonuclease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000161 | 1116922 | 1149323 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004750
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01138.20 | RNase_PH | 37 | 168 | 3.30E-21 |
| PF03725.14 | RNase_PH_C | 197 | 262 | 9.20E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03678 | RRP45, EXOSC9 | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0000178 | Cellular Component | exosome (RNase complex) |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 100.590 |
| SRR2545915 | Juvenile tuber | 112.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.510 |
| SRR5643514 | five period of Gastrodia elata | 40.090 | |
| SRR5643515 | five period of Gastrodia elata | 38.070 | |
| SRR5643524 | five period of Gastrodia elata | 37.690 | |
| SRR5643525 | five period of Gastrodia elata | 23.300 | |
| SRR5643528 | five period of Gastrodia elata | 20.870 | |
| SRR5643658 | five period of Gastrodia elata | 19.830 | |
| SRR5643659 | five period of Gastrodia elata | 69.710 | |
| SRR5643660 | five period of Gastrodia elata | 78.000 | |
| SRR5643661 | five period of Gastrodia elata | 80.240 | |
| SRR5643662 | five period of Gastrodia elata | 87.170 | |
| SRR5643663 | five period of Gastrodia elata | 81.890 | |
| SRR5643664 | five period of Gastrodia elata | 96.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 60.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 50.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 44.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 59.32 |
| Juven | Juvenile tuber | 67.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.94 | |
| Mother_Juven | Mother tuber of Juvenile | 36.38 |