Detail information of GWHGAAEX004759/evm.TU.scaffold_152.68


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08001.00E-124FOG: Predicted E3 ubiquitin ligase
nrgi|672166333|ref|XP_008803095.1|2.66E-150PREDICTED: E3 ubiquitin-protein ligase SDIR1-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q9M2S6|SDIR1_ARATH3.00E-125E3 ubiquitin-protein ligase SDIR1
trEMBLtr|C5WQ12|C5WQ12_SORBI7.00E-143Putative uncharacterized protein Sb01g039740 {ECO:0000313|EMBL:EER95107.1}
TAIRAT3G555301.00E-124RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000016117411781762434+
Transcript Sequence

Network for GWHGAAEX004759

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22232652.50E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms32.350
SRR2545915Juvenile tuber36.170
SRP108465SRR5643513five period of Gastrodia elata22.200
SRR5643514five period of Gastrodia elata19.780
SRR5643515five period of Gastrodia elata25.920
SRR5643524five period of Gastrodia elata19.990
SRR5643525five period of Gastrodia elata27.590
SRR5643528five period of Gastrodia elata20.800
SRR5643658five period of Gastrodia elata24.180
SRR5643659five period of Gastrodia elata19.890
SRR5643660five period of Gastrodia elata19.440
SRR5643661five period of Gastrodia elata24.400
SRR5643662five period of Gastrodia elata16.040
SRR5643663five period of Gastrodia elata15.350
SRR5643664five period of Gastrodia elata14.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.960
SRR6049655Rhizomagastrodiae_C368-T10_good_113.970
SRR6049656Rhizomagastrodiae_C368-T07_good_122.490
SRR6049657Rhizomagastrodiae_C368-T07_good_123.350
SRR6049658Rhizomagastrodiae_C368-T04_good_125.290
SRR6049659Rhizomagastrodiae_C368-T04_good_129.360
SRR6049660Rhizomagastrodiae_C368-T01_good_124.950
SRR6049661Rhizomagastrodiae_C368-T04_good_126.510
SRR6049662Rhizomagastrodiae_C368-T01_good_123.880
SRR6049663Rhizomagastrodiae_C368-T01_good_123.230
SRR6049664Rhizomagastrodiae_C368-T10_good_120.740
SRR6049665Rhizomagastrodiae_C368-T10_good_120.740
SRP279888GastroGastrodia elata tuber 23.69
JuvenJuvenile tuber17.52
Mother_GastroMother tuber of Gastrodia elata 103.44
Mother_JuvenMother tuber of Juvenile 47.65