Gene detail

Detail information of GWHGAAEX004763/evm.TU.scaffold_152.75

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3114	2.00E-52	Uncharacterized conserved protein
nr	gi\|672124269\|ref\|XP_008785510.1\|	1.14E-122	PREDICTED: protein YIPF1 homolog [Phoenix dactylifera]
trEMBL	tr\|M0T2K0\|M0T2K0_MUSAM	1.00E-107	Protein YIPF {ECO:0000256\|RuleBase:RU361264}
TAIR	AT5G27490	2.00E-52	Integral membrane Yip1 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000161	1998313	2028169	+

Transcript Sequence
>GWHTAAEX004763 ATTTGTTCTTATCAGTTTTTATATTTTTTAATTTATAAAACAAAAGAGAATATTTAATATTTGTATAAATGAATAAAAAATTTGATAAATTTATTGACATTCATAATTGTATTCTTACAGCCGATCGGCGATCAGCCATCCACCATCGGCCCACCTGCATCGTCCCGGGAAGAAACCAGAGACTTCGAAAGAAGTCTGTATCAGTCTCCCGAGAGGCGATTCCCCGATCATTTCTTCTTCTTCCAATTTGAATACAGGAAAGCCGTCCCTAATCGGAGTTTCACGAACAAGAGTATGCATGACATAGATTTATATCTTGAAGGGAAAATGACAGCTTTTATTTGGTAAACAATCTTCTATTCCGAGAGCAGTCGGCCTGAAATGGAAGAAGGCTACGCTAGTCTGCCTGCCAGTCACACGGTCGGGTCTGTTCCGGCAGCGATTTCTGAAGAAATTCAAGTTCCAAAGACGAATCTGCAAATCTTTCCTCCTGGTAATAGCGCTTCAGGCTATCAAGCTCCTGGGACTCCTTATGGTGAAGATGCTCAGACAACAAACAAATGGAATGGATATTTTAACATTTCTTCTTACCAACCATATTTCAATGTGGATACTGATATTGTATTTGATAGGCTTGTTGGTGCGGTGTATCCCATGTATGGCTTTTATACAAAAATAGATGCTAATCCAGATCTGTATGGCCCTATCTGGATATCGACCACACTTGTTTTCATGCTTTCTGCTTTGGGAAATTGTGCTGCTTATTTGATGCACAATGGGATCAAGCCAAATACTACATGGAATTTTGATGTCAACTACGTAAACTGGGCAGCCTGTGCTATATATGGCTATGTGCTTACAGTGCCGACTGCTTTTTATTTTCTGCTTCGTTATTTTGGATCAAATGCTGAACTTATAAAGCTCTGGTGCATTTGGGGGTACTCTCTCTTCATCTTCGTTCCAACCAGTATGTTTCTGGTGATCCCTGTTGAGGTTATTAGGTGGATCATCATACTCATTGTTGGTTCAGCATCTGCTTTCTTTGTTGCCCTGAACCTGAAGCCTTTCACGGAGGGCCAGCATGACCTTTTTCTTTGGATCATCGGAGCCTCGGCCTTGCAATTTGCTTTGGCAGTCTTCATCAAGGTGTTTTTCTTCGCTTAATAATGCTAAAAAAATTCGTATATACATTGTATTAATCTGTCTTATAGTTGTTTTTTTGACACTACGTTCTCCTGTTGCCATATATTGTATTGCATTTGGCACAGATCATTGCATCCCTATTCTGTTGAGTGTTATTTTTGCCCTTTTACTCTTTGGCTTGCTTTTTAAGAGCGTTTGGGTCGTGTGGTAAACTCTGTTTTCTTCTTTTTCATGTACTATTGTTTGTTCCTAGTTTTAAGAATAGATTAGTCATGAAGAGCTG

Network for GWHGAAEX004763

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04893.16	Yip1	74	220	1.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	58.740
SRP064423	SRR2545915	Juvenile tuber	59.090
SRP108465	SRR5643513	five period of Gastrodia elata	41.830
	SRR5643514	five period of Gastrodia elata	42.950
	SRR5643515	five period of Gastrodia elata	38.280
	SRR5643524	five period of Gastrodia elata	41.170
	SRR5643525	five period of Gastrodia elata	39.780
	SRR5643528	five period of Gastrodia elata	31.180
	SRR5643658	five period of Gastrodia elata	42.940
	SRR5643659	five period of Gastrodia elata	31.490
	SRR5643660	five period of Gastrodia elata	31.860
	SRR5643661	five period of Gastrodia elata	37.030
	SRR5643662	five period of Gastrodia elata	29.780
	SRR5643663	five period of Gastrodia elata	32.710
	SRR5643664	five period of Gastrodia elata	33.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.590
SRP279888	Gastro	Gastrodia elata tuber	38.04
	Juven	Juvenile tuber	28.51
	Mother_Gastro	Mother tuber of Gastrodia elata	24.51
	Mother_Juven	Mother tuber of Juvenile	23.31