Detail information of GWHGAAEX004769/evm.TU.scaffold_152.81


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|190571654|ref|YP_001976012.1|5.00E-21ankyrin repeat domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
nrgi|225434974|ref|XP_002283965.1|0PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Vitis vinifera]
Swissprottr|Q94B55|XB31_ARATH0Putative E3 ubiquitin-protein ligase XBAT31
trEMBLtr|A0A059D4B0|A0A059D4B0_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW85578.1}
TAIRAT2G288405.00E-180XB3 ortholog 1 in Arabidopsis thaliana

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000016121560862161847-
Transcript Sequence

Network for GWHGAAEX004769

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.6Ank_2181102.40E-10
PF12796.6Ank_21131841.60E-10
PF00023.29Ank1962210.00074
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms104.810
SRR2545915Juvenile tuber138.810
SRP108465SRR5643513five period of Gastrodia elata114.170
SRR5643514five period of Gastrodia elata90.970
SRR5643515five period of Gastrodia elata170.050
SRR5643524five period of Gastrodia elata141.900
SRR5643525five period of Gastrodia elata140.610
SRR5643528five period of Gastrodia elata193.130
SRR5643658five period of Gastrodia elata114.220
SRR5643659five period of Gastrodia elata181.250
SRR5643660five period of Gastrodia elata186.350
SRR5643661five period of Gastrodia elata203.840
SRR5643662five period of Gastrodia elata157.410
SRR5643663five period of Gastrodia elata133.170
SRR5643664five period of Gastrodia elata169.480
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_190.570
SRR6049655Rhizomagastrodiae_C368-T10_good_180.950
SRR6049656Rhizomagastrodiae_C368-T07_good_181.570
SRR6049657Rhizomagastrodiae_C368-T07_good_191.620
SRR6049658Rhizomagastrodiae_C368-T04_good_176.150
SRR6049659Rhizomagastrodiae_C368-T04_good_193.200
SRR6049660Rhizomagastrodiae_C368-T01_good_1107.840
SRR6049661Rhizomagastrodiae_C368-T04_good_177.870
SRR6049662Rhizomagastrodiae_C368-T01_good_159.950
SRR6049663Rhizomagastrodiae_C368-T01_good_194.490
SRR6049664Rhizomagastrodiae_C368-T10_good_177.850
SRR6049665Rhizomagastrodiae_C368-T10_good_177.850
SRP279888GastroGastrodia elata tuber 119.41
JuvenJuvenile tuber241.80
Mother_GastroMother tuber of Gastrodia elata 310.65
Mother_JuvenMother tuber of Juvenile 294.17