Gene detail

Detail information of GWHGAAEX004774/evm.TU.scaffold_152.86

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0773	1.00E-76	Transcription factor MEIS1 and related HOX domain proteins
nr	gi\|672182245\|ref\|XP_008811362.1\|	3.56E-131	PREDICTED: BEL1-like homeodomain protein 9 [Phoenix dactylifera]
Swissprot	tr\|Q9LZM8\|BLH9_ARATH	4.00E-77	BEL1-like homeodomain protein 9
trEMBL	tr\|D4QFI4\|D4QFI4_WHEAT	2.00E-109	BEL1-type homeodomain protein {ECO:0000313\|EMBL:BAJ04689.1}
TAIR	AT5G02030	1.00E-76	POX (plant homeobox) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000161	2308623	2313725	+

Transcript Sequence
>GWHTAAEX004774 TTCTGACTCTCTGTTGTTTTCATCCATTCATGATAACGTTAGACCTACCTCTCTTTCGCTCTTTTCCCTCACTGTTTACCCATTCCCTCCCTTTCTCATCATAGACTGCCAAAAAAAGCAGAGAAAGCAGGAGGTGATTATATGTCGTCGGCGGCGGAGGAGTTCGCCGGTGCGGGCGGTTTTCTATACCACTTTTCGCAGCATAGCCGAAGGGAGAAACTGCTCTACCCACAGGGCGAAGCCTCGCCGTCTCTTCCGCTTCTGTACCAATCCAACGGCGCCGGAGCCTTCCTCCCGTCCTCGTCGTACTACGGCCACCACAACTTGAGCGACTACGGAGCCCAGCAGATCCAGGCGCAGGGATTCTCCCTCTCCCTCTCACCGGCAGCTGTCGGTCCTCTCGGCCCTTTCACGGGCTACGCCGCCGTGCTGAATCGGTCCGGCTTTGTCGAGCCGGCCCGACAACTATTGGAGGAGATTTGCCGCCTGAGCCGAGCTGACTTCGCCTGCATCGGCGGCCGAGATCTGTCCACCGATGATCTAACGGTTCACAGCGATGCGGAGAGGGCTTGCACTGTGGGCGAGGACCACTGGAAGAAGGCTAAGCTTGCCTCCATGCTCGATGAGGTTTATAGAAGATACAGGCTATACTATCAGCAGGTGGAAAGTGTGATGGCATCATTTGAAACAGTGGCAGGCTTAAACACAGCGGCTCCATATATTTCTACGGCTCTAAAGGCCATGTCTAAGAATTTTAGGAGCCTGAAAAACCTCATATACAATCAGCTCAATAATCTAAGCAAGGTTCACCTCAAAGAAGAGCATGTTGGTAGAGGGGAGCTTGCAGCTGGGTTTAGCCTCACGGCAGCCAGTGGTGATCAGACGTGCTCCCAAAGGAGGAATTCCTCCCTTTCTTTCGGGCAGCCGAATGTGTGGAGGCCTCAGAGAGGGCTGCCCGAGCGCGCCGTTGCCGTTCTCAGGGCTTGGCTGTTTGAACATTTCTTGCATCCGTATCCTACTGATACGGACAAGCAAATGCTGGCTAAGCAAACAGGCTTGACCAGAAATCAGGTTTCCAACTGGTTTATAAATGCAAGAGTGAGACTGTGGAAGCCAATGGTGGAAGAGATACACAATCTTGAGATGCACCAACTGCAGAAGGCTGCGGCTGCATCCCCCCTCCAAGCCTCCACGTCCTCCAGCAGCAGGCCGGCAGCTGATGCCGCCATCTTCGCCCAAAGAAACGGCTCGCAGGACCGCTCGTACCGGCCGTCGGGCGATCTCTCCCACGTCGAAGAGCCTTACAAATTCGTGTTCGACGATTTCGTCGGCGACAGCCAGTCGGCGGTCGGAAACTCCGTCGTGTCGCTCACGCTCGGCCTGCCCGACCCGCTGCCCATGAACGTTGCGCGGCGGTTTGGGCTCGAAGAGTGCAGCAACGCGTACGTCCTCGGCGGGTTTGAAGGGCAGGAGAGGCATCTGCTTCATGATTTTGTTGGATGACTTGTTTGATTGGACGAAGAAGAAGTTACAGTTTTGCATGAATCTCCATTTCATTACTCCGCTCTTGAATTATATGCTCTGTTGATGATAGCTTCTTCATGAATTATATATTAAATTCTACCATTACTTGTATCTTTCATCCTAAGTATTGATTAGAGAAAATTTTAATATTTAGATATATTTTGCATTATCGCAAGATTATCCGATGAATTAAAAGTTGATAGTATTTACTTCTCTCCCAAGGTTTGCTTCAGGTCTTGTCAAATCGCAGATGTATAATTTAAAAATAGCTTTATTGTATTATATTGTTGTTACTGTTATTTACATGTTATAACACAGAACTCTTAAAGAAAGCGAAGTGACATGTATATGCTAATTGTATACATACCCATGCACGAATCATATACTATTGAAT

Network for GWHGAAEX004774

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07526.10	POX	96	212	3.10E-28
PF05920.10	Homeobox_KN	282	321	4.00E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-BELL

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.860
SRP064423	SRR2545915	Juvenile tuber	30.690
SRP108465	SRR5643513	five period of Gastrodia elata	39.520
	SRR5643514	five period of Gastrodia elata	34.170
	SRR5643515	five period of Gastrodia elata	27.950
	SRR5643524	five period of Gastrodia elata	33.540
	SRR5643525	five period of Gastrodia elata	100.130
	SRR5643528	five period of Gastrodia elata	56.640
	SRR5643658	five period of Gastrodia elata	102.930
	SRR5643659	five period of Gastrodia elata	53.040
	SRR5643660	five period of Gastrodia elata	66.300
	SRR5643661	five period of Gastrodia elata	65.580
	SRR5643662	five period of Gastrodia elata	115.980
	SRR5643663	five period of Gastrodia elata	78.100
	SRR5643664	five period of Gastrodia elata	134.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.660
SRP279888	Gastro	Gastrodia elata tuber	95.57
	Juven	Juvenile tuber	39.06
	Mother_Gastro	Mother tuber of Gastrodia elata	26.29
	Mother_Juven	Mother tuber of Juvenile	19.90