Gene detail

Detail information of GWHGAAEX004781/evm.TU.scaffold_153.5

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1278	Endosomal membrane proteins, EMP70
nr	gi\|743763960\|ref\|XP_010912180.1\|	PREDICTED: transmembrane 9 superfamily member 8 [Elaeis guineensis]
Swissprot	tr\|F4KIB2\|TMN8_ARATH	Transmembrane 9 superfamily member 8 {ECO:0000305} (Precursor)
trEMBL	tr\|A0A0A0L0C8\|A0A0A0L0C8_CUCSA	Endosomal P24A protein {ECO:0000313\|EMBL:KGN55425.1}
TAIR	AT5G10840	Endomembrane protein 70 protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000149	264464	280304	-

Transcript Sequence
>GWHTAAEX004781 CGAGAGACGCAACAATTGCTTAATAAATAAAGGAAAAAAAGAGCAAACGAATGCTTGAAAATTTAGGAATCGGGTACGATCTAATAAATACCTTTTCTCTTCATTTGCCGCAGTCCTTCCTCTCTCTCCAGATTACTTCTCTCTTGTTGTGGCCGTCTGCGGGTGATGAAGGTCGCTCGATCTGCGGCGATCCCGCCATGGATCGCGTTGGTTCTCGCGCTTTTTTCCATCAGAGCAAATGGATTTTACCTCCCCGGCGTCGCTCCGGCGGATTTCCAAAAGAAAGATCCTCTTCAAGTGAAAGTAAACAAGCTATCATCAACAAAAACACAACTTCCATATTCCCATTATTCACTTCCATACTGTAAGCCAAGTACTATAATCGATAGTGCCGAAAATCTCGGGGAACTTCTCCGTGGAGATCGAATTGAAAACTCACCATACACCTTTTTTATGCGGGAACCGCAGATGTGCAACATTGTATGCAAGATAACTCCCAGTGAGAAAGAGGCAAAGGATTTTAGAGAAAAGATAGATGATGAGTATAAGGTCAACATGATCCTTGATAATCTGCCGCTGGTTGTGCCCATCCGGAGGATGGACCAGGACTCTTCGACGGTTTACCAGCAAGGCTTCCACGTAGGAGTCAAAGGCCAATATACAGGGAGCAAGGATGAGAAGTATTTTATCCACAATCATTTATCCTTTCTTGTCAAATACCACAAAGATGAACAAACCGATTTAGCCAGGATTGTAGGCTTCGAGGTTAAACCCTTCAGTGTTAAGCATGGATTCGAGGGAAAATGGAACGGCGAGAAAACTCGGCTGACGACCTGCGATCCTCATGCAAGACGCACTGTTGCTAACTCTGATAATCCCCAAGAGGTGGAGGAGAATAAGGATATCATATTCACATATGATGTTGAATTTCAGGAGAGCGAAATCAAGTGGGCTTCTCGGTGGGATTCGTACCTTCTGATGGCGGACGACCAAATCCACTGGTTTTCCATCGTCAACTCTCTGATGATTGTTCTCTTCCTGTCCGGCATGGTGGCCATGATCATGCTGAGAACCCTGTATAGGGACATCTCAAAGTACAACCAGCTAGAAACCCAGGAAGAAGCTCAAGAAGAAACGGGTTGGAAGCTTGTTCACGGGGACGCATTCCGTCCTCCAAGCAACTCAGACCTGCTCTGTGTGTACGTCGGCACGGGAGTTCAGTTCTTGGGCATGCTCCTGGTGACCATGCTTTTCGCTGTCCTTGGCTTCCTCTCCCCTTCGAACCGAGGGGGGCTCATGAGTGCCATGCTCCTCCTCTGGGTCTTCATGGGCATCATCGCCGGCTACTCCTCTGCTCGCCTGTACAAGATGTTCAAGGGCACAGACTGGAAGAGGATCGCCCTGAGGACCGCATTCGTGTTCCCTGGGACCATCTTTGCCGTGTTCTTCGTGCTGAATGCCCTCATATGGGGCGAGAAGTCGTCTGGCGCGGTGCCCTTCACCACCATGTCCGCCCTCGTGCTCATGTGGTTCGGCATCTCAGTGCCTCTCGTCTTCGTCGGCTTCTATGTGGGATCGAAGAAGCCGGCGATCGAGGATCCGGTGAAGACCAACAAGATTCCGAGGCAGATCCCCGAGCAGGCGTGGTACATGAACCCAATCTTCTCGGTTCTGATCGGCGGAATCCTCCCCTTTGGGGCGGTCTTTATTGAGCTCTTCTTCATCCTGACCTCGATCTGGCTCCAGCAGTTCTACTACTTGTTCGGCTTCCTGTTTCTCGTCTTCCTCATCCTGATAGTCACCTGCGCCGAAATCACCATCGTCCTATGCTACTTCCAGCTCTGCAGCGAGGATTACCTCTGGTGGTGGAGATCGTACCTCACATCGGGCTCGTCGGCGCTCTACCTCTTCCTCTACGCCACCTTCTACTTCTTCACGAAGTTAGAGATCACGAAGCTCGTGTCCGCCGTTCTCTACTTTGGATACATGCTCATTGCTTCCTATGCCTTCTTTGTGCTGACCGGCACCATAGGCTTCTACGCCTGTTTCTGGTTTACGAGGCTCATCTACTCGTCGGTAAAGATCGACTGACCCACCTGCTAAGGGAGTGGGCGCCATCCTTTCTTTGATTCTATTGTATTTTTCAAAATCTTGTTTTCCTAAACTCTTTTTGGCTACTAGTTTGGTTTGTGGCTATAGTTTTTTTGAATTCTCAGTGTTCGTTTTTAGTTAACATGTGATTCCATTGCTGTAACCAATTAGCCTCTTCGACCTTTTTGGTTTTGAGGGTGGATTGCTATAATTCATTTCTTTTTTTCTTAGCTTTTCTTGCTTCTTGTTCTGC

Network for GWHGAAEX004781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02990.15	EMP70	58	597	2.60E-217

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	95.350
SRP064423	SRR2545915	Juvenile tuber	109.950
SRP108465	SRR5643513	five period of Gastrodia elata	92.270
	SRR5643514	five period of Gastrodia elata	94.800
	SRR5643515	five period of Gastrodia elata	93.190
	SRR5643524	five period of Gastrodia elata	89.430
	SRR5643525	five period of Gastrodia elata	114.230
	SRR5643528	five period of Gastrodia elata	110.690
	SRR5643658	five period of Gastrodia elata	138.380
	SRR5643659	five period of Gastrodia elata	86.310
	SRR5643660	five period of Gastrodia elata	95.250
	SRR5643661	five period of Gastrodia elata	87.460
	SRR5643662	five period of Gastrodia elata	83.010
	SRR5643663	five period of Gastrodia elata	93.040
	SRR5643664	five period of Gastrodia elata	87.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	130.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	113.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	130.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	142.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	139.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	156.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	144.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	139.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	117.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	135.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	114.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	114.010
SRP279888	Gastro	Gastrodia elata tuber	74.89
	Juven	Juvenile tuber	96.26
	Mother_Gastro	Mother tuber of Gastrodia elata	92.87
	Mother_Juven	Mother tuber of Juvenile	82.45