Detail information of GWHGAAEX004784/evm.TU.scaffold_153.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|220921314|ref|YP_002496615.1|2.00E-06SWIB/MDM2 domain-containing protein [Methylobacterium nodulans ORS 2060]
KOGKOG25700SWI/SNF transcription activation complex subunit
nrgi|743813645|ref|XP_010929776.1|0PREDICTED: SWI/SNF complex component SNF12 homolog [Elaeis guineensis]
Swissprottr|Q9FMT4|SNF12_ARATH0SWI/SNF complex component SNF12 homolog
trEMBLtr|M0T8S2|M0T8S2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P20740_001}
TAIRAT5G141700SWIB/MDM2 domain superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000149468411505365-
Transcript Sequence

Network for GWHGAAEX004784

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02201.17SWIB3013722.50E-21
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b

KEGG pathway

KO Enzyme pathway mapID
K11650SMARCD Thermogenesis map04714

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.460
SRR2545915Juvenile tuber24.160
SRP108465SRR5643513five period of Gastrodia elata19.540
SRR5643514five period of Gastrodia elata15.810
SRR5643515five period of Gastrodia elata18.350
SRR5643524five period of Gastrodia elata17.810
SRR5643525five period of Gastrodia elata21.120
SRR5643528five period of Gastrodia elata20.570
SRR5643658five period of Gastrodia elata23.360
SRR5643659five period of Gastrodia elata24.290
SRR5643660five period of Gastrodia elata26.710
SRR5643661five period of Gastrodia elata24.350
SRR5643662five period of Gastrodia elata27.220
SRR5643663five period of Gastrodia elata23.250
SRR5643664five period of Gastrodia elata25.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.930
SRR6049655Rhizomagastrodiae_C368-T10_good_135.160
SRR6049656Rhizomagastrodiae_C368-T07_good_119.750
SRR6049657Rhizomagastrodiae_C368-T07_good_127.400
SRR6049658Rhizomagastrodiae_C368-T04_good_126.050
SRR6049659Rhizomagastrodiae_C368-T04_good_131.920
SRR6049660Rhizomagastrodiae_C368-T01_good_125.270
SRR6049661Rhizomagastrodiae_C368-T04_good_124.180
SRR6049662Rhizomagastrodiae_C368-T01_good_119.510
SRR6049663Rhizomagastrodiae_C368-T01_good_123.790
SRR6049664Rhizomagastrodiae_C368-T10_good_119.630
SRR6049665Rhizomagastrodiae_C368-T10_good_119.630
SRP279888GastroGastrodia elata tuber 21.10
JuvenJuvenile tuber25.70
Mother_GastroMother tuber of Gastrodia elata 22.04
Mother_JuvenMother tuber of Juvenile 26.24