Detail information of GWHGAAEX004790/evm.TU.scaffold_153.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-162 | FOG: PPR repeat |
| nr | gi|672173076|ref|XP_008806656.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9LMY5|PPR41_ARATH | 8.00E-173 | Putative pentatricopeptide repeat-containing protein At1g13630 |
| trEMBL | tr|M8CYA0|M8CYA0_AEGTA | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMT28821.1} |
| TAIR | AT1G13630 | 1.00E-162 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000149 | 912550 | 915032 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004790
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 190 | 216 | 0.061 |
| PF12854.6 | PPR_1 | 254 | 286 | 4.50E-10 |
| PF13041.5 | PPR_2 | 292 | 340 | 2.90E-12 |
| PF01535.19 | PPR | 367 | 394 | 0.021 |
| PF13041.5 | PPR_2 | 398 | 435 | 1.60E-08 |
| PF01535.19 | PPR | 439 | 464 | 0.27 |
| PF13041.5 | PPR_2 | 469 | 515 | 2.80E-14 |
| PF13041.5 | PPR_2 | 537 | 586 | 2.90E-17 |
| PF13041.5 | PPR_2 | 608 | 656 | 2.90E-12 |
| PF01535.19 | PPR | 681 | 709 | 0.0003 |
| PF01535.19 | PPR | 717 | 745 | 0.11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.340 |
| SRR2545915 | Juvenile tuber | 8.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.630 |
| SRR5643514 | five period of Gastrodia elata | 6.620 | |
| SRR5643515 | five period of Gastrodia elata | 6.120 | |
| SRR5643524 | five period of Gastrodia elata | 5.860 | |
| SRR5643525 | five period of Gastrodia elata | 5.960 | |
| SRR5643528 | five period of Gastrodia elata | 4.000 | |
| SRR5643658 | five period of Gastrodia elata | 6.590 | |
| SRR5643659 | five period of Gastrodia elata | 9.240 | |
| SRR5643660 | five period of Gastrodia elata | 9.440 | |
| SRR5643661 | five period of Gastrodia elata | 6.790 | |
| SRR5643662 | five period of Gastrodia elata | 9.120 | |
| SRR5643663 | five period of Gastrodia elata | 7.630 | |
| SRR5643664 | five period of Gastrodia elata | 7.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.58 |
| Juven | Juvenile tuber | 11.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.83 | |
| Mother_Juven | Mother tuber of Juvenile | 8.31 |