Detail information of GWHGAAEX004798/evm.TU.scaffold_153.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2829 | 1.00E-59 | E2F-like protein |
| nr | gi|695011626|ref|XP_009392536.1| | 1.79E-84 | PREDICTED: transcription factor-like protein DPB [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FNY2|DPB_ARATH | 3.00E-66 | Transcription factor-like protein DPB |
| trEMBL | tr|M0SF63|M0SF63_MUSAM | 7.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P16470_001} |
| TAIR | AT5G02470 | 1.00E-59 | Transcription factor DP |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000149 | 1787574 | 1804148 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004798
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02319.19 | E2F_TDP | 88 | 158 | 5.20E-21 |
| PF08781.9 | DP | 167 | 268 | 3.00E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04683 | TFDP1 | TGF-beta signaling pathway | map04350 |
| Cell cycle | map04110 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005667 | Cellular Component | transcription factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.440 |
| SRR2545915 | Juvenile tuber | 22.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.070 |
| SRR5643514 | five period of Gastrodia elata | 14.250 | |
| SRR5643515 | five period of Gastrodia elata | 11.850 | |
| SRR5643524 | five period of Gastrodia elata | 14.280 | |
| SRR5643525 | five period of Gastrodia elata | 13.090 | |
| SRR5643528 | five period of Gastrodia elata | 9.050 | |
| SRR5643658 | five period of Gastrodia elata | 13.250 | |
| SRR5643659 | five period of Gastrodia elata | 13.020 | |
| SRR5643660 | five period of Gastrodia elata | 10.550 | |
| SRR5643661 | five period of Gastrodia elata | 11.280 | |
| SRR5643662 | five period of Gastrodia elata | 10.690 | |
| SRR5643663 | five period of Gastrodia elata | 10.370 | |
| SRR5643664 | five period of Gastrodia elata | 11.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.24 |
| Juven | Juvenile tuber | 8.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.27 | |
| Mother_Juven | Mother tuber of Juvenile | 5.18 |