Gene detail

Detail information of GWHGAAEX004799/evm.TU.scaffold_153.34

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1961	Vacuolar sorting protein VPS52/suppressor of actin Sac2
nr	gi\|672113439\|ref\|XP_008810948.1\|	PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q94KD3\|VP52A_ARATH	Vacuolar protein sorting-associated protein 52 A
trEMBL	tr\|D7T9L2\|D7T9L2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27183.3}
TAIR	AT1G71270	Vps52 / Sac2 family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000149	2040763	2126114	+

Transcript Sequence
>GWHTAAEX004799 CTTTATGCATCACCTTCTTCTTCCGCCACTGTACCCTCATCGTAGGCGTAGTGGGTGTATGACCGTCCTTCAGCTGCGCCAGAATTCCTCTCTTAGCCGATTAGGACTTCCCTTTCCCCATTTTTTGCTTACCATCCTCTTAATCTCCATCCACAATAAGCTCGAAAAGAGAAAGAAAGCTGCGAACCTGCTGCCCTAATTCTCCCTAACCTTGCATCTCAAAGACGAAACTGCAACCACTTCATCTTCTACATATCTAGAATCATTTGGATGACTAGGAGAGAAATTCCAAGAGCAAGAATCTAAGTTGCAGAATGTTCGGTAACTTTCCTTTGCAAACCCAAAGCGTAATACTTTAGAAGAGAGGTATCCAAAATTTCAGACTAAAGAGTGGGAAGGAGCATTTTCTGTATGTGAGAGCTTAAGAAGGTGGAATTTACTCCATGACAGGAAGAGAGTATTCATGGGATAGAAGCATATTTTCCAGCGATGATGTATCTCTGGAGGGACTGCAAGAAGAACTGGAAGAATGTAGAGATGATGATGAAATAAAAAATATACTTTCTAGAGGAACCAAATTGCGTGAGCATACAAAAGGCGTGGAAAATAATGTACGCCAAGTTGAACTGGACTCTATACAGGATTACATTAAAGAGAGCGATAACTTGGTTTTATTACATGATCAAATTCGGGATTGTGACAACATATTATCACAAATGGAGACCCTTCTTAGCGGGTTTCAGGCTGAGATTGGTTCTATAAGTTCAGATATTAAAAGCCTTCAAGAGAAATCCATGGACATGGGGCTGAAGCTGAAGAATCGCAAGACAGCAGAGTCAAAATTGTCAAAATTTGTTGAAGATATAATTGTACCTCCAAGAATGATTGACATTATTGTTGATGGCGAGGTAAATGAAGAATACTTGAGAACCCTTGAGATACTGAGTAAGAAGCTTAAATTTGTTGAAGATGATTCCATGATCAAGGCATCAAAAGCTTTAAAAGATGTTCAACCTGAACTTGAAAGACTTCGACAGAAGGCTGTTTCAAAGGTTTTTGAGTTTATGGTTCAAAAGCTGTATGCTTTGAGAAAGCCTAAAACTAATATTCAGATTCTGCAGCAAAATGTTCTTTTAAAATACAAATATGTGATTCATTTTCTTAAGGAATATGGTAAGGATATTTATACAGAGGTTCGTGTAGCTTACATTGATACAATGAACAAGGTTTTAAGTGCACATTTCCGTGTATACATTCAAGCAATGGAGAAAATGCAGCTGGACATAGCTTCACCAAGTGATTTGATTGGTATTGAGACTAGAAGTACTGGAATATTCTCAAGGTCAAGGGAGACAATAAAGAATCGTTCTTCTGTTTTTGCTCTAGGAGACAGAATAAAAATATTAAAGGAAATTGACCAACCGGCCTTGATTCCACATATTGCTGAAGCTAACTCCCAAAAATATCCATACGAAGTTCTCTTTCGGAGTCTGTACAAACTTTTGATAGATACTGCTACGTCAGAGTACCTCTTTTGTGATGATTTCTTTGGAGAAGATTCCATTTTTTATGAAATATTTGCAGGACCATTTGCTGTTCTTGATGAGCATTTCAACGCAGTGCTGACAAATTGTTACGATGCAATTGGTATAATGCTTATGATTCGAATTGTGCATCAACACAAATTAATCATGTTTAGGCGACGAATTCCATGTTTGGACTCCTACTTGGACAAGGCCAATATTTCTCTGTGGCCACGCTTCAAGATGGTCTTCGACATGCACCTCAGCAGCTTGCGTAACGCCAGTGTGAGGACATTATGGGAAGATGATGTCCACCCACATTACGCAATGCGGCGCTATGCTGAATTCACCGCATCCCTTCTGCACCTTAATGCCGACTATGGAGAAGGCCAGCTTGATCTTAACCTGGAAAGGTTACGGATGGCTGCGGAGGATTTGCTTGTAAAGCTGGCGAAAATGTTTGGAAGGCCAAAGCTGCAAACTGTCTTTCTGATAAACAACTATGATATGACCATCTCCATACTGAAGGAAGCTGGCACTGAAGGAGGGAAAATGCACGCACATTTCGAGGACCTGCTGAAAAGCAACATTGCTATATACGTGGAAGAACTGCTTCTGGAGCACTTCGGCGACCTGATCAAATTCGTCAAAACCCGGACCTTGGAGGAGACAAACCGGAGCGGGGGGGAGAGGGCGGCTGCAGGAGAGGTGGAGGGTCTGGTGAAGGACTTTGGGAGCAGGTGGAAGGGGGCGATAGAGCAGATGCACAGGAACGTCATCACCTCCTTCAGCAACTACGTGTGTGGGATGGAGATACTGAAAGCCGCCCTTACACAGCTGCTCCTCTACTACACACGGCTCTCCGAAGCCGCCAGGAAGATAGCTGGCAGCACCTCCGCCCTCAACAAGGATCTTGTCTCCATCTCCTCCATCCTCTACGAAATCAAGAAATACTCCAGGACCTTTTGATTTTTGCCATCCTTCAGTGTAGCAAAAGCAGTCGAGTTCCATTTTAGTGGTAGGGAGTCAGCAGTCACAATTGAGTGTGCGCCGCGCCCTCCTCTCATCGTTCTATGCCCACTCAGTTGTTGGTTTGATCTCGATCAACCTGCTACAATCACGGCTTGCTTGGGCACATGATTGAGTGCAGCCAAAGAACATGTCTCCAACACGCTTCTTCATTCGGCTCAATCCTTGTGCTCAATCTACTAAGTAAGATTTTCTTCTTGCTATTGTCGCAATTGCAATCTTCATTTTAGAAGGACCAGCTTCTAAATTGCAGGTTCATTTTTAGTAGTTACTTTGCAATCATCTACAACTATTTTGTAGTTAATTTGGTACTTAACTTGGAATTAGTTAGATTGAGGGTAAATGTATCAAAATTAATTTATGATTTTGTTATCAAGAAAATTAGGACAATCCCTAGTGCTATTTGGATTGAAGTAAAAGTAGTGTAAAGTAAAAAA

Network for GWHGAAEX004799

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04129.11	Vps52	62	560	3.50E-194

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	66.250
SRP064423	SRR2545915	Juvenile tuber	77.480
SRP108465	SRR5643513	five period of Gastrodia elata	44.820
	SRR5643514	five period of Gastrodia elata	53.670
	SRR5643515	five period of Gastrodia elata	49.330
	SRR5643524	five period of Gastrodia elata	52.090
	SRR5643525	five period of Gastrodia elata	32.580
	SRR5643528	five period of Gastrodia elata	32.570
	SRR5643658	five period of Gastrodia elata	36.470
	SRR5643659	five period of Gastrodia elata	51.580
	SRR5643660	five period of Gastrodia elata	52.990
	SRR5643661	five period of Gastrodia elata	49.560
	SRR5643662	five period of Gastrodia elata	55.160
	SRR5643663	five period of Gastrodia elata	59.970
	SRR5643664	five period of Gastrodia elata	56.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	57.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	54.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	54.410
SRP279888	Gastro	Gastrodia elata tuber	55.89
	Juven	Juvenile tuber	64.68
	Mother_Gastro	Mother tuber of Gastrodia elata	58.25
	Mother_Juven	Mother tuber of Juvenile	55.04