Detail information of GWHGAAEX004806/evm.TU.scaffold_154.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2859 | 4.00E-78 | DNA repair protein, member of the recA/RAD51 family |
| nr | gi|672120297|ref|XP_008783411.1| | 1.55E-115 | PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q682D3|XRCC2_ARATH | 6.00E-83 | DNA repair protein XRCC2 homolog |
| trEMBL | tr|A0A078CWI3|A0A078CWI3_BRANA | 2.00E-94 | BnaC09g06360D protein {ECO:0000313|EMBL:CDX81225.1} |
| TAIR | AT5G64520 | 4.00E-78 | homolog of X-ray repair cross complementing 2 (XRCC2) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000163 | 96092 | 144528 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004806
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08423.10 | Rad51 | 38 | 100 | 0.00012 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10879 | XRCC2 | Homologous recombination | map03440 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0008094 | Molecular Function | DNA-dependent ATPase activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.760 |
| SRR2545915 | Juvenile tuber | 2.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.140 |
| SRR5643514 | five period of Gastrodia elata | 2.220 | |
| SRR5643515 | five period of Gastrodia elata | 3.880 | |
| SRR5643524 | five period of Gastrodia elata | 2.410 | |
| SRR5643525 | five period of Gastrodia elata | 0.170 | |
| SRR5643528 | five period of Gastrodia elata | 0.690 | |
| SRR5643658 | five period of Gastrodia elata | 0.560 | |
| SRR5643659 | five period of Gastrodia elata | 2.010 | |
| SRR5643660 | five period of Gastrodia elata | 3.400 | |
| SRR5643661 | five period of Gastrodia elata | 3.310 | |
| SRR5643662 | five period of Gastrodia elata | 3.050 | |
| SRR5643663 | five period of Gastrodia elata | 1.710 | |
| SRR5643664 | five period of Gastrodia elata | 1.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.18 |
| Juven | Juvenile tuber | 15.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.82 | |
| Mother_Juven | Mother tuber of Juvenile | 4.30 |