Detail information of GWHGAAEX004807/evm.TU.scaffold_154.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|32472115|ref|NP_865109.1|3.00E-07glpG protein [Rhodopirellula baltica SH 1]
KOGKOG26322.00E-142Rhomboid family proteins
nrgi|727694786|gb|AIY60732.1|8.57E-154rhomboid protein Yucsm_RBL13 [Yucca filamentosa]
Swissprottr|Q8RXW0|Y3761_ARATH2.00E-09Uncharacterized protein At3g17611
trEMBLtr|M1BCD8|M1BCD8_SOLTU1.00E-148Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400042034}
TAIRAT3G595202.00E-142RHOMBOID-like protein 13

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000163277003278994+
Transcript Sequence

Network for GWHGAAEX004807

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01694.21Rhomboid482017.90E-27
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.770
SRR2545915Juvenile tuber6.720
SRP108465SRR5643513five period of Gastrodia elata7.010
SRR5643514five period of Gastrodia elata6.490
SRR5643515five period of Gastrodia elata7.960
SRR5643524five period of Gastrodia elata7.990
SRR5643525five period of Gastrodia elata7.390
SRR5643528five period of Gastrodia elata6.590
SRR5643658five period of Gastrodia elata5.860
SRR5643659five period of Gastrodia elata9.530
SRR5643660five period of Gastrodia elata9.520
SRR5643661five period of Gastrodia elata8.930
SRR5643662five period of Gastrodia elata9.220
SRR5643663five period of Gastrodia elata10.640
SRR5643664five period of Gastrodia elata8.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.120
SRR6049655Rhizomagastrodiae_C368-T10_good_13.280
SRR6049656Rhizomagastrodiae_C368-T07_good_13.970
SRR6049657Rhizomagastrodiae_C368-T07_good_13.620
SRR6049658Rhizomagastrodiae_C368-T04_good_12.830
SRR6049659Rhizomagastrodiae_C368-T04_good_15.280
SRR6049660Rhizomagastrodiae_C368-T01_good_14.460
SRR6049661Rhizomagastrodiae_C368-T04_good_14.290
SRR6049662Rhizomagastrodiae_C368-T01_good_14.160
SRR6049663Rhizomagastrodiae_C368-T01_good_14.100
SRR6049664Rhizomagastrodiae_C368-T10_good_15.500
SRR6049665Rhizomagastrodiae_C368-T10_good_15.500
SRP279888GastroGastrodia elata tuber 6.01
JuvenJuvenile tuber5.37
Mother_GastroMother tuber of Gastrodia elata 6.10
Mother_JuvenMother tuber of Juvenile 3.13