Gene detail

Detail information of GWHGAAEX004808/evm.TU.scaffold_154.5

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2020	3.00E-83	Nuclear transport receptor CRM1/MSN5 (importin beta superfamily)
nr	gi\|743865133\|ref\|XP_010904764.1\|	0	PREDICTED: protein HASTY 1 [Elaeis guineensis]
Swissprot	tr\|Q0WP44\|HASTY_ARATH	0	Protein HASTY 1
trEMBL	tr\|D7TUS2\|D7TUS2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34247.3}
TAIR	AT3G05040	3.00E-83	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000163	295492	361034	-

Transcript Sequence
>GWHTAAEX004808 CCCCCTTCCAGAAAACAGTAACCTCCGATTGCGATTCTACTAAAAAAAACATAGAGATCCGTATATGTACCCTGCCATGAACGATGGAAGCACCGCCGCCGCCAACGTTGCGGGAGCCATTTCCATATCACTTGATCACGCTTCCGCTCCCGATGCCCGGAGAGCCGCTATAGCTTATCTTGAATCTGTGAAAGATGGTGAGATTCATGTTTTAGCAAACGCATCCCTACTTTTGATCCGCAAGGAGTGCTCTTTAGAGATCCGGTTGCATGGCTTCAAAATGTTACAGCATTTAGTTCGATTTAGGTGGCATGAGTTTAATATCAATGAAAGAAGTGAGTTTTCTAAGGTTGCTATTGACTTAATAATGGATATGGTAAACCCGCTTGAAGAATGGGCTCTTAAGAGTCAGTCAACAGCTCTTGTTGCAGAGGTCGTTAGAAGAGAAGGAGTTGGTCTTTGGCAAGAGTTGGTGCCATCCTTAATATCTCTGTCTAACAAAGGACCTGTGGAAGCTGAATTGGTTTCTATGATGCTGAGATGGCTTCCTGAAGATATTACAGTGCATAATGAAGATTTAGAAGGTGATCGTAAACGAGTATTACTACGTGGTCTGACAGAATCCTTGGCAGATATTTTACCACTTTTATATTCATTACTTGAAAAGCACTTTGGTGCTGCTTTGGGTGAATATAACCGACAGCAATCTGATATAGCTAAGCAGCACATTGCTGCTGTGACAGCAGCTTTAAATGCTATAAATGCTTATGCAGAATGGGCACCCTTGCCGGACCTTGCCAAATATCACATTATTCTTGGATGCGGATTCTTGTTTTCTTCTCATGAATTTCGCCTCCATGCTTGTGAATTTTTTAAACTTGTATCCCAAAGGAAAAGGCCTCATGATGCATCTACATCTGAATTTGATTCTGCTATGGTTAATATCTTTCAAATCTTGATGCAAGCTTCTTGTGCTTTCTTAAACAAGTACGGTACTCATGCTGTTATTGCTGATGAAAATGAATTTGAGTTTGCTGAGCGAACATGTGAAAGCATGGTGGCTTTGGGCTCCTCACATATGCAATGTATTGCTTGCGATGGAAACATGACCTCTCAGTTTCTTCAACTGATGATGGGCTTTTATCAGCATTTTAAGTTTGGCCTTCATTTCCACTCTTTAATTTTTTGGCTGACATTGATGAGAGATTTGCTTTCCAAAGGAAAGTGTGTTGTTTCAAATACCGATTCAGATCTTTCGGTTGATAAATTGGGCTGGGGCTCTACTCAGGCAGATAAAGAGAAAACATGGTTGCCAATCTTTATTAATGATGACACATGTGCTGTTCTTTTAGACGTGTCTCTTCAACGAATGATTAAGAAAAGCAACATAGCTGGATATGCATTAAGTGGTGCTCTCGACCTATGGAGTGATGAATTTGATGGAAGTGATTTTGGCCAGTATCGTTCTAGATTGTTGGAGCTTATCAGGCTTGTTGCTTCTCATAAACCGGTAGTAGCTGCTGCTAGGATTTCACAAAGACTTGATGTTATTTTGGCCAATTCCACCCTGATATCCATACCTCCTGAGGCTGTAGTCTTGTTGGAAAGCATTCAACCTGGACTGGAAGCAATTGTGAGTGCAATATTTGATGGATCATCTGAATTGAACAACTATACCTCTGAAACCAAGCTCCAGTTACATGGCACCCTAGAAGGTTTTCTTCAGCAGCTTCTTTCCCAGAAGTGGATTGAATCACCACTTGCTGAATTATTAGCTCATTATCTTGATGCACTGGGTCCCTATTTGAAATTCTTTCCTAATTCAATTACCCCTGTTGTTAATAAACTTTTTGAACTGTTGACATCACTACCAATGACGCTCAAGGATCCTTCAAATGTTGCTCGTCATGCTAGATTACAAGTATGCACATCATTTATTAGGATTGCCAAAACTGCACATAAAAGCCTTCTTCCTCTTATAAAGGGGATTGCTGATACTATGGCATTACTTCAAGCAGAGGGTCGCTTACTCCGCGGTGAACATAATCTCTTAGGAGAAGCATTTCTTGTTATGGTGTCTACTGCTGGAATTCAACAACAACAAGAAGTTTTGGCTTGGTTACTTGAGCCTCTGAGCAAACAATGGACTCAATTGGAATGGCAAAACACCTACTTGTCCCACCCTTTTGGTCTAAAACAGTTGTTTTCAGATGCACAATTCATGTGGAATATTTTCCATACAGTAACCTTTTTTGAAAAAGCACTTAAAAGGAGTGGATACATGAAATCTAAAATGAATTCTCAAAGTTCCTCATCAGAAACCGATGTTTCCAATTGTCCTCATCCCATGTCTTTTCATCTGGCATGGATGTTACCACCTCTGTTCAGACTTCTTCACAGTGTCCACTCCCTTTGGTCGTCAACAATAGATAAAGCTTTAGCAGAAGAGTTGAGAGGAGCACAAAGTATGAGCAAAATTGAACAAGCTAGTCTCCTTGGGGAGAACATTTTGAAACTGCCAAAAGGCCAGTTTGCACATGCTGATGGATCTCAAATTGACATGCATAAAGAAGAGAATCCCAATGAAAATGATATTAGAAACTGGTTGAAGGGAATCAGAGATAGTGGTTATAATGTTATAGGCGTATCAGCAAATATTGGAGACCCCTTTTTCCGTGGCCTGGACTGTTCTCTTCTTTCCATGGCACTTATGGAGAATTTACAATCAATGGATTTCCGACACATTCGCCAATTGATTCATTCTATTGTTGTTCCTATAGTGAAGGCATGCCCTGCAGATTTGTGGGTTTCGTGGCTGGAAAACTTGCTTCATCCATTGTTTGCACACTGTCAGCAAGTTCTTTCTAGCTCATGGCATAGTCTCATGCGTGAGAGTAGAGCTAAGGTTCCTGACACTTTTATTTATTATTCTGGAATGGAGCTAAGGATAGAGGTGATGGAAGAAAAGTTGTTGCGTGACTTGACTCGGGAAATATGCCATCTTTTATCAGTTTTAGCTTCACCAACTCTTAATTGCGGGTTACCCTCTTTGGAACAACATGGGAATGCAAACCGTGCTGAATCATCTTCATTCAACTCATTGAATGCACTTTCTACAAATTCTATGATAGGATTTCTCATGACACGTAGAAGTATTGCTCTTCCAGCTTTGAAAATATGTATCGAAGCCTTTTCTTGGACCGATGGTGAATCGGTTGCTAAAGTTGCATTTTTCTGTGGAGCAGTCCTCCTTCTTGCTATATCGACTGATAATGTGGAATTGAGGGAGTTTGTTTCCAAGGATTTATTCTACGCCATACTCCAAGGTCTTTTCTTAGAATCGAATGCAATCATTAGTTCAGAACTTGTTGGTCTTTGCCGTGAAATATATGTTTATATGTCAAGCAAGGACTCTTCTCCAAGACAGATTCTGTTATCCCTCCCCTGTCTTACAGAGGAGGATTTAGTTGCTTTCGAGGATGCTCTGACTAAAACTAGTAGCCCGAAAGAACAAAGGCTACATATGAGAAGTTTGCTTCAGTTGGCTACAGGAAACAAGTTGAGAGCACTTGCTTCTCAAAAGAGCACTAGCAGCATAACGAATGTTACAGCAAGAAGCAATAGTTCGTCAGCTGGCCCTTCTCACAGCGGAGAAGAAGACAATGCTATTGGGTTAGCATTAATAACGTAAGAGTTGTCAAGAATGCCTTTTAGAAGACTGTTTGATGTACTGAACTGTTACTGTACAGTTTCTTGGATTTTTCAATTTCTAAAGGTCACAGAGATATATTTATGTTTTTGTTATATACAAAAGAGCTGAGAGTGAAGGCAGGAAAACTCTCCCACTATGTATATGCACACAGACTAATTTTTGCCTCTTTTTGTTTTGTATAAACCTGAGGTGCTGAGAACATTTTTGCTGATCTCAAACTATAATTTTGTTAAAATTCAATGCTGATGGTTTTTGCCTATGGA

Network for GWHGAAEX004808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08389.11	Xpo1	111	269	2.60E-20

Protein Sequence

>GWHPAAEX004808
MYPAMNDGSTAAANVAGAISISLDHASAPDARRAAIAYLESVKDGEIHVLANASLLLIRKECSLEIRLHGFKMLQHLVRFRWHEFNINERSEFSKVAIDLIMDMVNPLEEWALKSQSTALVAEVVRREGVGLWQELVPSLISLSNKGPVEAELVSMMLRWLPEDITVHNEDLEGDRKRVLLRGLTESLADILPLLYSLLEKHFGAALGEYNRQQSDIAKQHIAAVTAALNAINAYAEWAPLPDLAKYHIILGCGFLFSSHEFRLHACEFFKLVSQRKRPHDASTSEFDSAMVNIFQILMQASCAFLNKYGTHAVIADENEFEFAERTCESMVALGSSHMQCIACDGNMTSQFLQLMMGFYQHFKFGLHFHSLIFWLTLMRDLLSKGKCVVSNTDSDLSVDKLGWGSTQADKEKTWLPIFINDDTCAVLLDVSLQRMIKKSNIAGYALSGALDLWSDEFDGSDFGQYRSRLLELIRLVASHKPVVAAARISQRLDVILANSTLISIPPEAVVLLESIQPGLEAIVSAIFDGSSELNNYTSETKLQLHGTLEGFLQQLLSQKWIESPLAELLAHYLDALGPYLKFFPNSITPVVNKLFELLTSLPMTLKDPSNVARHARLQVCTSFIRIAKTAHKSLLPLIKGIADTMALLQAEGRLLRGEHNLLGEAFLVMVSTAGIQQQQEVLAWLLEPLSKQWTQLEWQNTYLSHPFGLKQLFSDAQFMWNIFHTVTFFEKALKRSGYMKSKMNSQSSSSETDVSNCPHPMSFHLAWMLPPLFRLLHSVHSLWSSTIDKALAEELRGAQSMSKIEQASLLGENILKLPKGQFAHADGSQIDMHKEENPNENDIRNWLKGIRDSGYNVIGVSANIGDPFFRGLDCSLLSMALMENLQSMDFRHIRQLIHSIVVPIVKACPADLWVSWLENLLHPLFAHCQQVLSSSWHSLMRESRAKVPDTFIYYSGMELRIEVMEEKLLRDLTREICHLLSVLASPTLNCGLPSLEQHGNANRAESSSFNSLNALSTNSMIGFLMTRRSIALPALKICIEAFSWTDGESVAKVAFFCGAVLLLAISTDNVELREFVSKDLFYAILQGLFLESNAIISSELVGLCREIYVYMSSKDSSPRQILLSLPCLTEEDLVAFEDALTKTSSPKEQRLHMRSLLQLATGNKLRALASQKSTSSITNVTARSNSSSAGPSHSGEEDNAIGLALIT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14289	XPO5	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.520
SRP064423	SRR2545915	Juvenile tuber	16.070
SRP108465	SRR5643513	five period of Gastrodia elata	6.660
	SRR5643514	five period of Gastrodia elata	8.340
	SRR5643515	five period of Gastrodia elata	8.420
	SRR5643524	five period of Gastrodia elata	7.430
	SRR5643525	five period of Gastrodia elata	7.840
	SRR5643528	five period of Gastrodia elata	7.520
	SRR5643658	five period of Gastrodia elata	9.020
	SRR5643659	five period of Gastrodia elata	9.170
	SRR5643660	five period of Gastrodia elata	11.020
	SRR5643661	five period of Gastrodia elata	10.260
	SRR5643662	five period of Gastrodia elata	10.910
	SRR5643663	five period of Gastrodia elata	11.420
	SRR5643664	five period of Gastrodia elata	11.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.330
SRP279888	Gastro	Gastrodia elata tuber	15.54
	Juven	Juvenile tuber	10.68
	Mother_Gastro	Mother tuber of Gastrodia elata	9.23
	Mother_Juven	Mother tuber of Juvenile	8.75