Detail information of GWHGAAEX004809/evm.TU.scaffold_154.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1076 | 0 | Translation initiation factor 3, subunit c (eIF-3c) |
| nr | gi|743811646|ref|XP_010929215.1| | 0 | PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Elaeis guineensis] |
| Swissprot | tr|Q9XHM1|EIF3C_MEDTR | 0 | Eukaryotic translation initiation factor 3 subunit C {ECO:0000255|HAMAP-Rule:MF_03002} |
| trEMBL | tr|F6HLF0|F6HLF0_VITVI | 0 | Eukaryotic translation initiation factor 3 subunit C {ECO:0000256|HAMAP-Rule:MF_03002} |
| TAIR | AT3G56150 | 0 | eukaryotic translation initiation factor 3C |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000163 | 458079 | 469778 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004809
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05470.11 | eIF-3c_N | 49 | 656 | 2.70E-228 |
| PF01399.26 | PCI | 689 | 794 | 4.80E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03252 | EIF3C | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006413 | Biological Process | translational initiation |
| GO:0031369 | Molecular Function | translation initiation factor binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003743 | Molecular Function | translation initiation factor activity |
| GO:0005852 | Cellular Component | eukaryotic translation initiation factor 3 complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 122.050 |
| SRR2545915 | Juvenile tuber | 133.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 94.520 |
| SRR5643514 | five period of Gastrodia elata | 92.380 | |
| SRR5643515 | five period of Gastrodia elata | 93.100 | |
| SRR5643524 | five period of Gastrodia elata | 93.120 | |
| SRR5643525 | five period of Gastrodia elata | 71.670 | |
| SRR5643528 | five period of Gastrodia elata | 76.420 | |
| SRR5643658 | five period of Gastrodia elata | 86.000 | |
| SRR5643659 | five period of Gastrodia elata | 101.690 | |
| SRR5643660 | five period of Gastrodia elata | 104.450 | |
| SRR5643661 | five period of Gastrodia elata | 103.230 | |
| SRR5643662 | five period of Gastrodia elata | 95.830 | |
| SRR5643663 | five period of Gastrodia elata | 88.800 | |
| SRR5643664 | five period of Gastrodia elata | 98.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 106.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 85.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 109.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 118.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 111.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 143.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 130.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 129.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 114.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 130.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 107.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 107.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 91.91 |
| Juven | Juvenile tuber | 108.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 71.35 | |
| Mother_Juven | Mother tuber of Juvenile | 89.36 |