Detail information of GWHGAAEX004811/evm.TU.scaffold_154.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG14747.00E-69Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins
nrgi|743763301|ref|XP_010911829.1|5.67E-140PREDICTED: transcriptional activator SPT7 isoform X3 [Elaeis guineensis]
Swissprottr|Q9FT54|GTE6_ARATH3.00E-15Transcription factor GTE6
trEMBLtr|M0TK36|M0TK36_MUSAM2.00E-111Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23500_001}
TAIRAT1G580257.00E-69DNA-binding bromodomain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000163613277633145+
Transcript Sequence

Network for GWHGAAEX004811

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00439.24Bromodomain2032854.70E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms66.240
SRR2545915Juvenile tuber55.850
SRP108465SRR5643513five period of Gastrodia elata26.450
SRR5643514five period of Gastrodia elata19.820
SRR5643515five period of Gastrodia elata20.710
SRR5643524five period of Gastrodia elata20.150
SRR5643525five period of Gastrodia elata30.510
SRR5643528five period of Gastrodia elata31.720
SRR5643658five period of Gastrodia elata51.660
SRR5643659five period of Gastrodia elata39.330
SRR5643660five period of Gastrodia elata48.870
SRR5643661five period of Gastrodia elata39.160
SRR5643662five period of Gastrodia elata46.040
SRR5643663five period of Gastrodia elata53.170
SRR5643664five period of Gastrodia elata52.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.430
SRR6049655Rhizomagastrodiae_C368-T10_good_150.430
SRR6049656Rhizomagastrodiae_C368-T07_good_134.820
SRR6049657Rhizomagastrodiae_C368-T07_good_165.900
SRR6049658Rhizomagastrodiae_C368-T04_good_146.180
SRR6049659Rhizomagastrodiae_C368-T04_good_152.810
SRR6049660Rhizomagastrodiae_C368-T01_good_148.910
SRR6049661Rhizomagastrodiae_C368-T04_good_144.190
SRR6049662Rhizomagastrodiae_C368-T01_good_133.070
SRR6049663Rhizomagastrodiae_C368-T01_good_137.980
SRR6049664Rhizomagastrodiae_C368-T10_good_129.320
SRR6049665Rhizomagastrodiae_C368-T10_good_129.320
SRP279888GastroGastrodia elata tuber 53.27
JuvenJuvenile tuber66.35
Mother_GastroMother tuber of Gastrodia elata 27.30
Mother_JuvenMother tuber of Juvenile 47.68