Gene detail

Detail information of GWHGAAEX004813/evm.TU.scaffold_154.14

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|307154267\|ref\|YP_003889651.1\|	4.00E-26	Serine/threonine-protein kinase-like domain-containing protein [Cyanothece sp. PCC 7822]
KOG	KOG0308	0	Conserved WD40 repeat-containing protein
nr	gi\|590642993\|ref\|XP_007030678.1\|	0	Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	2.00E-18	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A061F3F9\|A0A061F3F9_THECC	0	Transducin/WD40 repeat-like superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY11182.1}
TAIR	AT3G05090	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000163	869608	914338	+

Transcript Sequence
>GWHTAAEX004813 ATGTTATGTTGTGTGAATGTCCGTCGATTTCCGCCGACATTCAGCCATCCGATAGGGTATTTTGCGCTTTTCGACGCCGAGCTCGCCGAGATCGCTTCCGCCATCGCTGCCGTACGCGCTCGCCTTGCTTCGTCTGCCATCGCTGCCGCCATCGCTGCCACCATCGTTGCCGCCGTTGCTGCCATACGGTCGCAGAGGTCGCCCGACTCCCTCTCGCCGCTCGCCGAGATAGCTGCCTCCATCGTTGCCGCCATCGCTGCCAGACGCACGCAAGGTCGCGACGACTCCCTCTCGCCTCTCGCGCGAGCAAGCAGCAGCCGATCAGGAGCTTTCACAATGCATCGTGTGGCTAGTGCTGGTAACACATCTAATTCAACTCGACCTCGGAAGGAGAAACGATTAACATATGTCTTGAAGGATACCGATGACACAAAGCATTGTGCAGGCATTAACTGCTTGACTATTTTAAAGTCTTCAAATAGTGGTTGTGATTATCTTTTTACCGGAAGTAGAGACGGAACATTGAAAAGATGGGCCATAGCTGATGTCGAGGCTAGTTGTGTTGCAACGTTTGAGTCGCATGTTGATTGGGTTAATGATGCTGTTCTTGCTGGTAATACCTTAGTTTCATGCTCATCTGACACTACTGTCAAGGTCTGGAATAGCTTGTCTGATGGTATTTGTACCAGAACTTTTCGTCAGCATTCTGATTATGTTACTTGCCTTTCCGCTGTTGAAAAGAATGGCAATGTTGTTGCATCTGGGGGACTTGGTGGGGAGGTTTTTATTTGGGACCTTGAAGCTTCAGTTCTTCCGGTTGCCAAATCTACTGATGTTATGGATGATGAAGCTTCTAATAAATCGATTAATCCAGGAGCCTATGGGCTTCCCATGACAAGTTTGCGTTCTGTTACTTCTAGCAACTTGTCTGTGAATAATGCACAATCTCACGGATACAATCCTACTGTGGCCAAAGGTCATAAAGAGTCAGTATATGCCCTAGCACTGAATGAATGTGGAACCTTACTTGTTTCTGGCGGTACAGAGAAGGTTATCCGTGTTTGGGACCCCAGAACTGGTTCAAAGAATATGAAGCTAAGAGGGCATACTGATAATATCCGAGCTTTGCTACTTGATTCTACAGGAAGGCTTTGCTTATCTGGATCCTCTGATTCAATGATACGTTTATGGGATCTTGGTCAGCAACGTTGTGTGCATTCTTATTCTGTTCATACAGATTCAGTCTGGGCACTTGCCAGCACTCCTTCGTTTTCTCATGTTTACAGTGGTGGGAGGGATCTTTCTTTATATCTTACAGACTTAACAACACGAGAGAGCATTTTGCTATCTACAAATGAACATCCAGTTCTTCAACTAGCTTTACAAGATGATGGCATATGGGTTGCAACAACTGATTCATCAATTCAAAGATGGCCAGCTGAAGTATGTCACCCTCAAAAGGTTTTTCAAAAAGGTGGTTCGTTCTTAGCTGGAAATTTGTCATTTTCAAGGGCAAGAGCTGTTTTAGAAGGATCATCTCCTGCTCCAGTTTACAAAGAATCGTCATTCACTATACCAGGCATTCCAGCAGTTGTGCAACATGAAATTTTGAACAATAGAAGACAAGTTCTAACTAAGGATACATCAGGTTCAGTAAAGTTGTGGGAGATTACCAGGGGAGTCGTGATTGAGGACTATGGCAAGGTTTCATTTGAGGATAAAAAAAAAGAGCTCTTTGAAATGGTGAGCATTCCTGCCTGGTTTATCATGGATACACGCCTTGGGAGTTTGTCAATCCATTTGGATAGTCCTCAATGTTTTTCAGCTGAAATGTATGCTGCTGACTTGAGTATTGCAGGAGCGCCTGAAGATCTCAAGATTAATCTTGCTCAGGAGACTCTTCGTGGTTTGTTAGCACATTGGATCACTAAAAGAAGGCAACGGTTTGGCTCACAAGCTTCTAACGGCGATGGAGCACCGGGAAGAGACACAGCTGGTAGAAATATTTCACTTTCAAGAATTGATGCTGATGAGAATGCAGAAAATCACCATCTTGTTCTCCCTGCATTTGAATTTTCTACTGTTTCTCCTCCTTCCCTTATAACTGAGGACTCACAAGGATGCTCTTGGAGGAAAAAAGTTACGGAGTTAGATGGCTCACTAGACGAGAAGGATATTCCATGGTGGTGTTTAGACTGTGTGTTGAATGGGCGCATACCACCGAGAGAGAATACAAAGTGCAGCTTTTATTTGCATCCTTGTGAAGGTTCAAATGTACAAGTCCTAACGCAAGGAAAATTGAGTGCACCGCGCATTTTACGTGTACACAAAGTAGTTAACTATGTCCTAGAGAAAATGGTTATGGATAAACCTGCCGAGGGGAGCAGCAGCAATACGGAAGGGCAATTTGGGTTTGTTCCGGGCATAATAGGGCAGTCCCTTGGTGATGGCTCCTTGCGAGCAGGGTTGAAGCCATGGCAAAAGAGAAAGCCCGCTATTGAGATCCTCTGCAACAACCAGGTCTTATTGCCGGATATGAGCCTCGCCACGGTTCGAACCTACATATGGAAGAAGCCTGAAGATCTGGTTCTCAATTACCGCTTAGTTTCTCAGAATAATAGGTGCTTAGTTTCTCAGAATAATAGGTGATGACGACATCTGCTCATCACGTTTCTGCAGCCTCAATGGTTAAGCATCATCCAGCCTCACACGTTTTTTGGCCTACTGAGAACACTATTTTACTAATCAAGCACTTTTTTTTTCTCTTAGGAACTTGTTCCCAGCTGCCCGTTTCTGTTATATTATGTTGTGCATTACACACACATATATATATATA

Network for GWHGAAEX004813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	186	221	0.0075
PF00400.31	WD40	228	265	0.0003
PF00400.31	WD40	325	356	0.0032
PF00400.31	WD40	363	398	0.00052
PF00400.31	WD40	403	437	0.1
PF11816.7	DUF3337	719	867	5.70E-29

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K15361	WDR48, UAF1	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.410
SRP064423	SRR2545915	Juvenile tuber	25.740
SRP108465	SRR5643513	five period of Gastrodia elata	27.220
	SRR5643514	five period of Gastrodia elata	29.270
	SRR5643515	five period of Gastrodia elata	27.410
	SRR5643524	five period of Gastrodia elata	29.840
	SRR5643525	five period of Gastrodia elata	21.920
	SRR5643528	five period of Gastrodia elata	19.820
	SRR5643658	five period of Gastrodia elata	23.920
	SRR5643659	five period of Gastrodia elata	28.530
	SRR5643660	five period of Gastrodia elata	30.420
	SRR5643661	five period of Gastrodia elata	29.750
	SRR5643662	five period of Gastrodia elata	22.040
	SRR5643663	five period of Gastrodia elata	26.260
	SRR5643664	five period of Gastrodia elata	25.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.400
SRP279888	Gastro	Gastrodia elata tuber	31.21
	Juven	Juvenile tuber	48.69
	Mother_Gastro	Mother tuber of Gastrodia elata	31.88
	Mother_Juven	Mother tuber of Juvenile	44.63