Detail information of GWHGAAEX004818/evm.TU.scaffold_154.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|182416080|ref|YP_001821146.1| | 2.00E-55 | pectinesterase [Opitutus terrae PB90-1] |
| nr | gi|695075929|ref|XP_009385223.1| | 4.21E-179 | PREDICTED: putative pectinesterase/pectinesterase inhibitor 28 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8GX86|PME21_ARATH | 3.00E-160 | Pectinesterase 21 |
| trEMBL | tr|M0RTZ1|M0RTZ1_MUSAM | 2.00E-179 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT3G05610 | 9.00E-160 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000163 | 1212185 | 1249919 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004818
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 61 | 207 | 2.10E-17 |
| PF01095.18 | Pectinesterase | 240 | 536 | 2.90E-129 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.130 |
| SRR2545915 | Juvenile tuber | 0.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.640 |
| SRR5643514 | five period of Gastrodia elata | 1.150 | |
| SRR5643515 | five period of Gastrodia elata | 0.280 | |
| SRR5643524 | five period of Gastrodia elata | 0.570 | |
| SRR5643525 | five period of Gastrodia elata | 3.760 | |
| SRR5643528 | five period of Gastrodia elata | 2.430 | |
| SRR5643658 | five period of Gastrodia elata | 4.010 | |
| SRR5643659 | five period of Gastrodia elata | 0.600 | |
| SRR5643660 | five period of Gastrodia elata | 0.420 | |
| SRR5643661 | five period of Gastrodia elata | 0.860 | |
| SRR5643662 | five period of Gastrodia elata | 4.010 | |
| SRR5643663 | five period of Gastrodia elata | 1.850 | |
| SRR5643664 | five period of Gastrodia elata | 4.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.39 |
| Juven | Juvenile tuber | 0.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.54 | |
| Mother_Juven | Mother tuber of Juvenile | 0.09 |