Gene detail

Detail information of GWHGAAEX004826/evm.TU.scaffold_154.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|403509378\|ref\|YP_006641016.1\|	2.00E-32	putative serine/threonine-kinase pknA domain protein [Nocardiopsis alba ATCC BAA-2165]
KOG	KOG0597	0	Serine-threonine protein kinase FUSED
nr	gi\|743845887\|ref\|XP_010938695.1\|	0	PREDICTED: serine/threonine-protein kinase ULK4 [Elaeis guineensis]
Swissprot	tr\|Q2QAV0\|TIO_ARATH	6.00E-44	Serine/threonine-protein kinase TIO
trEMBL	tr\|F6HDI2\|F6HDI2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50353.1}
TAIR	AT5G18700	0	Protein kinase family protein with ARM repeat domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000163	2037401	2054976	-

Transcript Sequence
>GWHTAAEX004826 ATGAGTGCTGATTATCGACAAGTTGGCAGTCGACTCTGGTTTGGCATAGCTTTGGAATATAGGAGATTGGGATTGAATATGAACAACTATCATGTTTATCAGGCCATAGGCCGCGGCAAGCACTCCACTGTTTACAAGGGCAGGATGAAGAAGTCGATCGAGTATTATGCTATAAAGAGCGTTGACAAATCCCAAAGGTCGAAGGTTCTCCATGAAGTGAAGATGCTTCATGGCTTGGACCATCCAAATATTATAAAATTCTATTCCTGGTATGAAAGCTCGGCTCACCTTTGGCTAATTTTGGAATACTGCGTTGGTAGAGATCTTATGAGTTTGCTGAAGGAAGATGGGAGACTTCCAGAAGATTCAATACATGACTTGGCTTATTGTATCGTCAAGGCTCTCCAGTGTCTTCACTCTAAAGGAATAATTTATTGTGATTTAAAGCCATCAAACATTTTACTGGATGAGAATGGACATATAAAGCTTTGTGATTTTGGCTTAGCAATGAGACTGAGCGAAATCGAGAAAATTTCATCTAACAAAGTGCTACAGTTCAAACGAGGGACTCCTTGTTATATGGCTCCAGAGCTTTATAAGGATGGAGGAGTGAACTCTTATGCTTCTGATTTTTGGGCATTAGGCTGTTTAATGTATGAATGCTATGCTGGAAAACCTCCCTTCATAGGAAATGAGTTTACTAAGTTGGCAAAATCAATTCTTCTGGATTCTACCCCTGATCTTCCTGATAAGCCTTCTGTTGCTTTTGTAAATTTGATCAATGATTTGCTAATTAAAGATCCAACAAAAAGGTTGAGCTGGGCCGGACTTTGTGAGCATGAATTTTGGCGAGCAAAGTTTACACCTGTTTCTATTCCTCAGCCTGCTTTCAGTAATCTGCTACATTTATCTGCAAAATCATCTCTCACAAAAAAAAATGGTGAAAGGCCTTCACAACAGAGCACACCTACAAAAGATCGAGAAAAGGTTGCAAATGATGGGATTTCTTATACTAAAAAAAAAATATTTGAGATATCTCCAAAAAATTCTATTTTGACAAAAAAAGTTCAAGTGAAAGCTGCTGATTCAGTCATTGAAGATAAGCGAAAAGTTGCCCAAAATGTTGTAAATGAAGTCAATCTTCTTAGACTTTCAAAATTGGCAAATTTGAACCTTCAAAGAGAGGTTGAAAAGGAAAACTACAGGTTTCCTCTTCCTAGTGAAAATAAAAATGAAGGTGAAGTGAAAATTGAAAATTATGACATGGAACTTGATTTTGGTGAAATCCCTGAGGATGATCCATCAGATGAAACTGATGCTTTAGAGAATACCGCTATTTGCCTCACTGAAAATCATTTCAGTGAAAGTTCCATTCCTGATATTGAAACAACAGGGAATGACACAAACCTACAGGATGCAACTAGTGGTGGCATTTTTTTAATGCCTGAAAACATAAAGAAACCTGAAAGCGATGTTCATTCTGAAAAAAAGGATATTGATGTCAATCTTAGACCTAGTGCTTTTCTTCAAGGAAATGATCAGTTCTCTAAATTCAATTCTGGAGCTAACCCTGAGACAAATTCATCTTATAATTCTTGTAATGCTTTAGAGGTGTTTTGGCATCAAACAGATCTCTCAGTCAAGCCTGTGATGCCTAGCCGTAAGGGCAACAAAACTTTAGATGCAATTCCGTCTCTTACTTTTGAAGTTGTACCTGCATCTGAATATGCTAAATTGCTGCCTGAGCAGTTGAGCGCACTTAATAATCAAATAATTCATGGACTCAATGGTAGTTCTCAAAATTCAGAGAAAGTAATCAAATATTTAGAAATACTAAGTACAAATTCTGATGCGGCCAACTTAATAATGAATGGGGCAATAATGCTGTTACTTTTGAAGATGTTGCGCCATCCAAAGTCATCTATCCTGCGCACTCAGATTGCTTCAGTGGTAGGCTTATTTATTCGCCACTCCACTTACATTGCAGCTGATTTGGCAAATTCTGGTATGATAGATTCCCTCGTACATGGTGTAAGGGATAAGCAAGACAAAGTTAGGAGGTTTTCTATGGCTGCATTGGGAGAGCTACTGTTTTACATTTCTACTTTGAAATGTGAGAAAGATAACTGTGCTACTGAATCTCCATTAAAGGACAAGCATCGCTCATCTGTTTGGCAGGTGCCCAGTTATCTAGTTAGTTTGGTGTCATCATTCTTGCGGAAGGGTGAAGATGATGTAGTACAGTTGTACGCATTAAAAACAATTGACAACATATGCAGTCAAGGTGAAGATTGGACATCTCGTTTTGCAAACCTTGATGTTATAGGGAATCTTTGTTTCATATATAGGGCCACGAACAAGCTGGAGAGTACAAGGCTTGTTGCTGGATCTTGTTTAGTTCGCTTGGCTCATTTCAACCCATTAACCATACAATTAATCTTGGAGAAGCTTTCGATCAAAGATATTGCTTCCTTAGCTACCAAAAGTGGAAGCCAACCTCGTGAAAAACAAATATGTTTGAACCTTCTTAACATGACCATCCTTAGCAGTCATTGCCTATCTTCAACAATGCGGCGTCTTTCTTCGATGATGGATGAATTGGTTCAGGGATTGTTATCACTTATTGAACAAGGGGATAATGTTGTACGCGGGAAAACACTTAATTTTGTGGCTCTTCTTTGCAAGAATAGCGGCAGGTGGTTTTCTAGATTTCTTTGCAATGCGAGATTACTATCTTCGGTGGACAGACTGGCGAAGGAGAAGGATAGCTTTCTTCAGCTGTGCATGGAGAAATTTGTGCAAATTATATCTTCTACAGTGCCTGAGATACTTGAAACTGTTTCTAGTGATATGCAGCTGCTTATTGGAGGTAAACGACATGGGCTTGGGGCTGTAGTAGCTGCAAGAAACAACACAAAAAAAAGCTTCGATCATTTTCCTGCCATTCTAAATCTTTTCGGCAGCTCTTCTTTCAAACATAGAGTAGTGAACAGCCAGGTCTTGTTCCGGCTGACAAATCTAATCAAGCTTTTAGAATCTTCTTTTGAGGGGAGAGATGACTTCCAGATAACGCTGCTGCGGATACTTGAAGCAGTTGCAGAAGACCCTTCTTCCATTCTTAATGATCCCAAGATTTTCACGGGTCTTGTTCTTCCTGGCCTTGCTACCTTATACATAGGTAATAAGGATGGTGATGCTAGATTTTTGTGTCTGAAAATATTATTTGATGTGATGGTGGTGATTCTGAGCGACACATCGGCTGCCTTGAACAATGATGATGGGCAAGTTTCGAGGGACTTGAAAGTGATATCTGAAGAGCATTTTCTCCCACTTTATCCCAAATTTATTGAGGATGAAGATCCAATTCCAATGTATTCTCAGAAGCTTCTAGTGATGCTCATTGAATATAAGTACATCAATATCTCTGAAATTTTACATCATGAAACAGTCTCAAAGTGCTTTGAGTTCTTACTAAGCGATTTGTCTAATGCAAATGTGAATAATGTGAAGCTTTGCCTCGCATTGGCATCTGCTCCTGAGATGGACACCGAGATATTGTCCCACTTACAAGTTGTTAGAAAGATTGGAAATCTTCTCGAGTTTGTGAATGCAAACGGATTGGAAGATTTTCTTGGGTCAACATTGGGTCTTTGCAAGGCATTTCTTCTGCGCAGCATAGGAATTGATAGAGGATTACTTATTTGTAAGGAACCGGCACGAATTCTAGGCAGCACTGCCTCCGACATCAGCCTCCATACCGACCTGCTACATCGTATCAAAGATATATCCGATTTCAGCTTCCACATTAGCTCATTTTTAGAACTGACTGGGAATTTTGATGCATTGATTGGAGATTTGGCCTCTGAATGCGTTGCCTTGTTGCTCAAAGCAGCGCCCAGAGAAGCGACGACGGGTCTTTTGACAAATCTTTCTAAAATTAGCGGTCTTTTGGAAGGTTTGGTTGAGCCTGTTTGTACTATGAGGTTGGTTCGGCTGTTATATGCTCTTGCTTTTGCCTGTAGTAATAACCTGTCACAGGCGATGATAATATCAATCTCTATGCCAGATGTGATGCGTATTCAAGTTTTGCTTTCAGGCCTTAAGAACTCTCGTGTTCCTCATATTTCAGCTGCCGCTTTAACTTTAAGCATAGAGTTGCAGCGATTGCCTCGCCGTGTTTGA

Network for GWHGAAEX004826

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	30	282	6.20E-65

Protein Sequence

>GWHPAAEX004826
MSADYRQVGSRLWFGIALEYRRLGLNMNNYHVYQAIGRGKHSTVYKGRMKKSIEYYAIKSVDKSQRSKVLHEVKMLHGLDHPNIIKFYSWYESSAHLWLILEYCVGRDLMSLLKEDGRLPEDSIHDLAYCIVKALQCLHSKGIIYCDLKPSNILLDENGHIKLCDFGLAMRLSEIEKISSNKVLQFKRGTPCYMAPELYKDGGVNSYASDFWALGCLMYECYAGKPPFIGNEFTKLAKSILLDSTPDLPDKPSVAFVNLINDLLIKDPTKRLSWAGLCEHEFWRAKFTPVSIPQPAFSNLLHLSAKSSLTKKNGERPSQQSTPTKDREKVANDGISYTKKKIFEISPKNSILTKKVQVKAADSVIEDKRKVAQNVVNEVNLLRLSKLANLNLQREVEKENYRFPLPSENKNEGEVKIENYDMELDFGEIPEDDPSDETDALENTAICLTENHFSESSIPDIETTGNDTNLQDATSGGIFLMPENIKKPESDVHSEKKDIDVNLRPSAFLQGNDQFSKFNSGANPETNSSYNSCNALEVFWHQTDLSVKPVMPSRKGNKTLDAIPSLTFEVVPASEYAKLLPEQLSALNNQIIHGLNGSSQNSEKVIKYLEILSTNSDAANLIMNGAIMLLLLKMLRHPKSSILRTQIASVVGLFIRHSTYIAADLANSGMIDSLVHGVRDKQDKVRRFSMAALGELLFYISTLKCEKDNCATESPLKDKHRSSVWQVPSYLVSLVSSFLRKGEDDVVQLYALKTIDNICSQGEDWTSRFANLDVIGNLCFIYRATNKLESTRLVAGSCLVRLAHFNPLTIQLILEKLSIKDIASLATKSGSQPREKQICLNLLNMTILSSHCLSSTMRRLSSMMDELVQGLLSLIEQGDNVVRGKTLNFVALLCKNSGRWFSRFLCNARLLSSVDRLAKEKDSFLQLCMEKFVQIISSTVPEILETVSSDMQLLIGGKRHGLGAVVAARNNTKKSFDHFPAILNLFGSSSFKHRVVNSQVLFRLTNLIKLLESSFEGRDDFQITLLRILEAVAEDPSSILNDPKIFTGLVLPGLATLYIGNKDGDARFLCLKILFDVMVVILSDTSAALNNDDGQVSRDLKVISEEHFLPLYPKFIEDEDPIPMYSQKLLVMLIEYKYINISEILHHETVSKCFEFLLSDLSNANVNNVKLCLALASAPEMDTEILSHLQVVRKIGNLLEFVNANGLEDFLGSTLGLCKAFLLRSIGIDRGLLICKEPARILGSTASDISLHTDLLHRIKDISDFSFHISSFLELTGNFDALIGDLASECVALLLKAAPREATTGLLTNLSKISGLLEGLVEPVCTMRLVRLLYALAFACSNNLSQAMIISISMPDVMRIQVLLSGLKNSRVPHISAAALTLSIELQRLPRRV

Gene family

Gene family	subfamily
Protein Kinases Family	ULK_ULK4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.910
SRP064423	SRR2545915	Juvenile tuber	2.780
SRP108465	SRR5643513	five period of Gastrodia elata	2.330
	SRR5643514	five period of Gastrodia elata	1.730
	SRR5643515	five period of Gastrodia elata	1.720
	SRR5643524	five period of Gastrodia elata	1.620
	SRR5643525	five period of Gastrodia elata	1.560
	SRR5643528	five period of Gastrodia elata	0.780
	SRR5643658	five period of Gastrodia elata	1.030
	SRR5643659	five period of Gastrodia elata	1.990
	SRR5643660	five period of Gastrodia elata	2.170
	SRR5643661	five period of Gastrodia elata	2.150
	SRR5643662	five period of Gastrodia elata	0.990
	SRR5643663	five period of Gastrodia elata	1.590
	SRR5643664	five period of Gastrodia elata	1.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.610
SRP279888	Gastro	Gastrodia elata tuber	1.46
	Juven	Juvenile tuber	2.11
	Mother_Gastro	Mother tuber of Gastrodia elata	1.40
	Mother_Juven	Mother tuber of Juvenile	1.24