Gene detail

Detail information of GWHGAAEX004827/evm.TU.scaffold_154.32

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2001	Gamma-tubulin complex, DGRIP84/SPC97 component
nr	gi\|743811335\|ref\|XP_010929137.1\|	PREDICTED: gamma-tubulin complex component 2 [Elaeis guineensis]
Swissprot	tr\|Q9C5H9\|GACP2_ARATH	Gamma-tubulin complex component 2
trEMBL	tr\|M0T1A3\|M0T1A3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P24280_001}
TAIR	AT5G17410	Spc97 / Spc98 family of spindle pole body (SBP) component

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000163	2126321	2153806	+

Transcript Sequence
>GWHTAAEX004827 TTCTCGCTCTCGGCAAGGACGAAGACGACGCCCCCGAATATCACTCTCGCCAAGGACGAAGACGACGCAAGAAGTTTTCACTCGCCGATCTGACCATCGCTAAAGCAGAGGCAGATTCACGATCATTTTGTGGCGGCTGCTCAAGCTAGGTTGCACTTGATCACCTTATACAGTAGAGTTAAATATGGCTCTTCCCATGTGGAATGCTGAGAGACCCTTCCTCACTGGTCGATTCCATAAGGAATCCAAAATTCTGAGTGCAACATCTGGCCCCAAACCTTTCTCCTTGGATTTATTAAGTCGTGGTTCTGAAAATATTATTGGATCGTACCCGGTTTCAGTTCAGGAATTGTTGGTCATTGATGATTTGCTTTCTGCTCTTGTGGGCATTGAGGGGCGCTACATTTCAATAAGTAGAGTGCAGGGAAAGGAGGGTCATGTTGTATTCCAAATTGACCTTTCAATGGACTTGGCTCTGCAGGAGTTGATAAAGAGGCTATTTCCTCTTTGTGAGGCCTACATGCTGACCACTTGGTTTGTGGAGACCAAATCACATTTTGGATCTGGTCTTGTGAACAATGCATTAGCTGCTGCAATGAGAGCCCTCATTTTGGATTACCAAGCCATGGTTGCACAGCTTGAACATCAGTTTCGTCTTGGAAGACTTTCTTTGCAAGGGTTGTGGTTTTTTTGTCAGCCAATGATGGCAGCACTGCATGCTTTATCTATTGTAATTGACAAGGCCTTTTCTGACAATTTATTTGGTTCTGGTACACTCGATCTTTTGCAAAGCCAGGCTAAGGCCATGGCAGGTGATAATACAGTCCGTGCTTTACTTGAGAAGATGGCACAGAATGCAAGCATTCCATATCTGTCAATTTTAGAAAGATGGGTTTACGAAGGGGTTATTGATGATCCGCACGGTGAATTTTTCATTGCTGAAAACAAATCCCTGAAAAAGGAGAGTCTTACACTAGACTATGATGCCAAGTACTGGCAACAACGCTACAGTCTCAAAGTTGACATTCCTAACTTCCTAAGGAGTGCTGCAGCCATGATTTTGACAACCGGGAAATATTTAAATGTTATGAGAGAATGTGGACACAATGTTCAGGTGCCCCCATCAGAAAATTCAAATTTGAGAAGCTTTGGGTTAGATCATCATTATCTGGAATCTGTCAAGAATGCTTATGATTTTGCTAGTTGTGAACTCCTAAATCTCGTCAAGGAAAAGGTGTTGCAGTTCAGAACTTTTATTTATTATCAAAAAATTTATTTGCCTTACTTTCTTTGGTCGTCTTGGCCGCCAACTTCAAACTATTTTTCTTCTTTACAGTATGGCCTAATTGGGAAATTGCAATCTATGAAGCGATACTTTCTTCTGAACCAGGGCGATTTTTTGGTTCATTTTATGGACATCGCTATGGAGGAACTTATCAAGAGGCCTGAGAACATATCTACTGAAAAGCTTCAGTCACTCCTTGACCTTGCTCTTCGGTCAACAGCAGCTGCTGCAGATCCATATCAAGAGGAATTTACATGCTGTGTGGATAGAGTCTCACTGCTAAAGAAAATGTCTACATTAAAAGATTTGGAGAGCTCTTTTCATACTCTTGCTAACAAACCTGTTTCAGACATCGTTGATTCACTGGAGCCAGTAGGCATCAGCGGTATAGAAACATTCTCTCTTAGTTACAAGGTTCGGTGGCCGCTCTCACTCGTCATATCAAGAAAGGCTCAAACAAAATATCAGTTGATTTTTCAGCTTCTGTTCCAATGCAAACATGTAGAGCGCCAACTGTGTGTGGCATGGCAAGTACATCAAGGTTTCCGTTCTCATAGCATACTTGGTACATCCATCATACGTTCTTGTAATCTCTGTCGCACTATGCTTAAATTTATCAATAGCCTTCTGCATTATTTAACGTTTGAGGTTCTTGAGCCAAATTGGCATATGATGCATAACCACCTTCAAACTGTGAAGAGCATCGATGAGGTGATCCACTTGCACGATTTCTTTCTTCAAAAATGCTTGAAAGAATGCTTACTTCTCTTCCCTCTGCTTGTTAAGAAGATGGAGAAACTGAAGTCAATATGTCTTCAGTATGCTGCATCTATCCAATTATTGATGCCGTCTCTCTATACATCTGACGTGGTTGATGCGACAGAGTCCTGCACTTTTGGATTAATAAAATCAAAAGATCGGAAATCAAGAGGAAGAAGCGGGGCACTTAAACCAACAGAGAACCCCATCTTCTCTAATTCCATTGTGAGGCTTGAGAATGACTTCAATGCGGAGCTTCAGAGTCTCCGGTCTCTTCTTAGCAGCGGATCACAAACTGAGCCATACTTGACTCATCTCGCACAATGCATTCTTGGTGTGGGAGGTGATCGCTGAGCTGATTTGTTTCTTTATTTTTCTTGACTTTCTATTATCCATCTCTTGTAGTATCGACTCTAATGGAGAGTTTGTCCTTCATTATTGATAAACCTTAGATGGCACATAAAAAAAAATTAACAATAGATTAAAATTTTGTGATTGTATTTTTTTTGTGCCATTGGATTCATTATGTTGCTAACCTAAAGCCACTTCAAACTTTTGTAATCATCCCGTGGTCTACTCCAAGGAAAACTCACTGTATTTGAGGCTTCAAAA

Network for GWHGAAEX004827

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04130.12	Spc97_Spc98	61	348	4.60E-49
PF04130.12	Spc97_Spc98	384	621	2.40E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043015	Molecular Function	gamma-tubulin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.530
SRP064423	SRR2545915	Juvenile tuber	23.720
SRP108465	SRR5643513	five period of Gastrodia elata	18.300
	SRR5643514	five period of Gastrodia elata	20.820
	SRR5643515	five period of Gastrodia elata	19.830
	SRR5643524	five period of Gastrodia elata	21.630
	SRR5643525	five period of Gastrodia elata	17.730
	SRR5643528	five period of Gastrodia elata	20.300
	SRR5643658	five period of Gastrodia elata	21.190
	SRR5643659	five period of Gastrodia elata	16.440
	SRR5643660	five period of Gastrodia elata	16.780
	SRR5643661	five period of Gastrodia elata	17.030
	SRR5643662	five period of Gastrodia elata	17.110
	SRR5643663	five period of Gastrodia elata	18.920
	SRR5643664	five period of Gastrodia elata	16.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.650
SRP279888	Gastro	Gastrodia elata tuber	22.34
	Juven	Juvenile tuber	22.76
	Mother_Gastro	Mother tuber of Gastrodia elata	17.81
	Mother_Juven	Mother tuber of Juvenile	19.08