Detail information of GWHGAAEX004831/evm.TU.scaffold_154.38_evm.TU.scaffold_154.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|268316481|ref|YP_003290200.1| | 5.00E-118 | sun protein [Rhodothermus marinus DSM 4252] |
| KOG | KOG1122 | 0 | tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) |
| nr | gi|566153344|ref|XP_002300381.2| | 0 | NOL1/NOP2/sun family protein [Populus trichocarpa] |
| trEMBL | tr|B9GFY0|B9GFY0_POPTR | 0 | NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EEE85186.2} |
| TAIR | AT3G13180 | 0 | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000163 | 2395146 | 2477669 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004831
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01029.17 | NusB | 117 | 221 | 6.30E-19 |
| PF01189.16 | Methyltr_RsmB-F | 350 | 544 | 2.60E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006364 | Biological Process | rRNA processing |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0008649 | Molecular Function | rRNA methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.300 |
| SRR2545915 | Juvenile tuber | 19.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.210 |
| SRR5643514 | five period of Gastrodia elata | 8.530 | |
| SRR5643515 | five period of Gastrodia elata | 6.850 | |
| SRR5643524 | five period of Gastrodia elata | 7.290 | |
| SRR5643525 | five period of Gastrodia elata | 12.330 | |
| SRR5643528 | five period of Gastrodia elata | 9.060 | |
| SRR5643658 | five period of Gastrodia elata | 15.740 | |
| SRR5643659 | five period of Gastrodia elata | 11.000 | |
| SRR5643660 | five period of Gastrodia elata | 12.590 | |
| SRR5643661 | five period of Gastrodia elata | 8.640 | |
| SRR5643662 | five period of Gastrodia elata | 10.250 | |
| SRR5643663 | five period of Gastrodia elata | 12.930 | |
| SRR5643664 | five period of Gastrodia elata | 10.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.61 |
| Juven | Juvenile tuber | 17.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.56 | |
| Mother_Juven | Mother tuber of Juvenile | 13.40 |