Gene detail

Detail information of GWHGAAEX004832/evm.TU.scaffold_155.1

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743825983\|ref\|XP_010933158.1\|	0	PREDICTED: uncharacterized protein LOC105053615 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8RXA7\|SCD1_ARATH	4.00E-10	DENN domain and WD repeat-containing protein SCD1 {ECO:0000305}
trEMBL	tr\|M0RSZ3\|M0RSZ3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P17130_001}
TAIR	AT2G20320	0	DENN (AEX-3) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000152	22459	147824	-

Transcript Sequence
>GWHTAAEX004832 GCGTGGCATAACTCATTCCCAGCCCCCTGCATTTGCGATTCGCACGCTGGCCATATTTCTGGTAATCGATTTTTCAATTTGTCGTCGCCTTCTCATCATTCGGTTAATCGGTTCGATGCCCCATTCCTCCATCCTGCTCCGAAGGTTTTGGCAAAACCAATACGTTTTCCTGAATCCGAGAATCGAAGGATTACATAGGTAGCTAATCGAAAAGCTCCCCATAGTGTCGGATGCCAGTTGTCTGCATGAAATCTTGGAATGGGAGCTAAAGCGGTTGGGATGGAAGGAGAAGCTTTGCGAGAGAGCCTCGACGAGGCGAAGTGGCCCGTGTCAACGCCGGCGGAGGATTCATCAGATGATACGGGCGTCTCTGCTGAGGCTGCGGCTTCTACGCCGACGTCTCGTTGCTCGTCTCCGCTCGAGAACGTGAGAATAGCGGGTCATGCTCGGAGCAACAGCTTTCAGCGATGGAAAGGGCAGTTGCAGCGGGCATGGCGGTGGGGCTCGGTTTGGGGCGTCATGCCCGGTGGGAATCGGGAGCAGAGTGTGATGGCGGCGCTCAACCTGGAGATCCTGGCGAAACAGAAGAGACTGTGGTGTCGAACTACGCAATCCAAAATTCGGGATATTAAGCAACATGGGGAGCCAACATCACTTTTTGAACAATTCTTCATTGTGGGGCTCCAGTCACATGCAAATGTTGAACTCATTGAGCATGCACTTTTTAAGAGAAAAGCCTTGGAATCTGATGTGGCAAACTTTGAGAGTCTTGATCTTAAGAAGCAATATAATGGACAAATCCCTACTCTTGAACCTCAGGTTCTTTACAAGTATCCTCCTGTGAAGAAAGTAGCAATGAGAGAAAATGATATACCAGCCTTTTGTTTTCCTGAAGGCATTAAGGCTCGTTTAGTGGAAAGAACGCCATCAATGAGTGATCTTAATGAACTAGTGTTCGGACAGGAGCATCTTACAAGGGATGATTTGTCTTTTGTTTTTTGTCTCAAGGTATCAGATAATTCAACTTTATACGGTGTATGCCTTCATATTCAAGAGATTGTTTACAGGGCACCAGGTATTTTGGGTGCCGACTCACCAGTCACTGCTACTTACAAGCGAAGCCGTTTTTTGGTATCTGCACCACGTTGTTATTGCTTACTTACACGAGTTCCATTTTTTGAACTGCATTTTGAGATGTTAAACAGCATAATTTCACAAGAGCGCTTGGACAGGATAACTGGATGTATCTGTGACATTACTTCCATTGAACCAGTTCCTCAGTTAATTCTAGATCATGAAAAGGTTGATGAGAACTATGATTACTACAGCAGGGAACTCTTCGACAGGTGGATGGGATTTACAAATTCAGTTGACAGTGTCACATGCCTCACTTCACCTTCAGCTGGTATGATGCCTGAGAAGGAGGCTATGCCAAGTTTATTCATGCCACCAGACTGCCATTCTCCAGAAAGTGTTTCTTTTAGTGAAGTTTCAGACACAAGTCATGCAAGAGAATTAGATAGGGAATCCAGAAAGTCTTGGCAGTGCTTGGATGACTTCAGCTTAGAAAAGTCTGGGTATCATTCCGACAGCTTTGAAAGAGAGATTGGAGTGTTTGAAAATGGGCAAGCATCACCAGAGGTGAATTCAACAATACATCATTCCATCAAGTACCCATTAGAGCGTGTAGAAAGTTTGGAGTCTATCTACAGTTCAGTTAGAGGCTTGGAATCAGATGAAGAAGATAATGATTTTAGCTCAAATTTTGATGCAATTGCTTGTGATGAAAAAGTAATTGTATGGGCAAAGGCAAACAATAATGAATCATTGCAAATTGTATGTGGTTATCATTCACTTCCAATACCAACTCGCGGCGGGAAAGTAATATTTCACCCATTGGAGCACTTGCAGCCAATAACGTATAGTCGTCCAGATGTTTCTACTCTTAGATTATACATCAATTATGATATTGATAGAACTGTTTGCCCTGAGTTTAATGAGCTCAGCTTGAGGCTAGCATCTGCTGAAGAAGCTTTTGCCTTCTCAGTTTGGACAGTTGCAACAGTTTGTCGTGCTCTATCCCTTGAAAGTGTTTTGGGTCTTGTCGCTGGAGTATTATTGGAAAAACAAGTTGTAGTCAGATGCTCAAATTTGGGAATTTTATCAGCCATTGTTTTGTCAACGATTCCTATGATTCGTCCATTTGAGTGGCAGAGTTTGTTTCTTCCGGTGCTACCAAGTAAAATGATCGATTTCCTTGATGCTCCTGTTCCTTACATCGTGGGTATACAGCATAAACCATCTGATATATACACAAAAATGAACAACTTCATATTGGTTAATGTTTGCAAGGATAAGGTTAATACGCTTTCTTTGCCCCAACTTCCATGCTATAGGGAACTTGTCTCTGAACTGACCCCTGTTCATTCTAGATTAGCATGTGAAAACTCCATAACTAAAAGGCATCCTGTATATAAATGCAGTGAATTTCAGGCTGAAGCTGCTAGAAACTTTTTGTGCATTTTGAGACGCTTTATGGAATCACTATGCTCAAATTTGCGGTCTCATACAATCACTAATATTCAGGCCAATAATGATAAGGTTTCTCTTCTTCTTAAAGACAGCTTTATTGATTCATTTCCCGTTAAGGATCGGCCATTCATGAAGCTTTTTGTGGACACACAACTGTTTTCCGTTCTTTCGGATTCTCAGATGTCGAGCTTCGAGAATGAAAAGCCTTTATTGTGAAGAATATATATACATATATATATGTGTGTGTGTCTTAATACAGGCAAGATAAGGCGCTGATGATACCCAGCCTAAAACCATCCCATTGTTTTTTAAAAGGGAATGCTGTATGCACTGTTTAAAATTTGTAAGTTCCTTCTATGAGTACTATTTTTTGGACAACGTAATTAATAAACAATCTTCCAGCTGATTTGATTTTTTGGGGATGAAATTCATTCCTCCTTCAATTCAAAGTTTATATGATTCGCATTGCTTTTCCC

Network for GWHGAAEX004832

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03456.17	uDENN	186	263	2.80E-11
PF02141.20	DENN	599	698	2.00E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.570
SRP064423	SRR2545915	Juvenile tuber	9.680
SRP108465	SRR5643513	five period of Gastrodia elata	9.300
	SRR5643514	five period of Gastrodia elata	9.140
	SRR5643515	five period of Gastrodia elata	7.570
	SRR5643524	five period of Gastrodia elata	8.950
	SRR5643525	five period of Gastrodia elata	12.520
	SRR5643528	five period of Gastrodia elata	11.090
	SRR5643658	five period of Gastrodia elata	11.530
	SRR5643659	five period of Gastrodia elata	6.550
	SRR5643660	five period of Gastrodia elata	7.630
	SRR5643661	five period of Gastrodia elata	5.800
	SRR5643662	five period of Gastrodia elata	7.650
	SRR5643663	five period of Gastrodia elata	8.420
	SRR5643664	five period of Gastrodia elata	8.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.800
SRP279888	Gastro	Gastrodia elata tuber	11.23
	Juven	Juvenile tuber	24.68
	Mother_Gastro	Mother tuber of Gastrodia elata	13.98
	Mother_Juven	Mother tuber of Juvenile	30.98