Gene detail

Detail information of GWHGAAEX004835/evm.TU.scaffold_155.4

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158336013\|ref\|YP_001517187.1\|	7.00E-31	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|743831079\|ref\|XP_010934582.1\|	0	PREDICTED: ABC transporter G family member 39-like [Elaeis guineensis]
Swissprot	tr\|Q7PC84\|AB39G_ARATH	0	ABC transporter G family member 39
trEMBL	tr\|Q6ZBI0\|Q6ZBI0_ORYSJ	0	Putative PDR6 ABC transporter {ECO:0000313\|EMBL:BAD09728.1}
trEMBL	tr\|Q6ZBI0\|Q6ZBI0_ORYSJ	3.00E-29	Putative PDR6 ABC transporter {ECO:0000313\|EMBL:BAD09728.1}
TAIR	AT2G36380	0	pleiotropic drug resistance 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000152	175262	230925	-

Transcript Sequence
>GWHTAAEX004835 ATGACGCTTATTCTTGGACCACCAGGTTCAGGAAAATCAACTTTCATGAAGGCCTTGTCAGGAAAATTGGATCCGTCATTAAAAACCAACGGAAATGTCACATTCAATGATCAAGAGCTCAAATGTTTTACATCAGAACAACTATGTGTATATGTTAGCCAGGAGGATGTTCATCATGCTGAGATGACTGTTCGTGACACTTTAGATTTCGCCAGCTGCATGTTTGGAACTAATAAAGCATTTGGTAAGTTGATCCAATTTCTATTGCACCTATACGCAAGAAAGAATAAAAAGAATCAAAATCTGTTTAATAATTCTTACACTTCGAACATATATAATGCCCAGTTTTACAAGAGGCTTCTCTGTTTTTCCTATCACCAGGTGCTTGGTTTAGAGGATTGTGCAAATGTTATTATAGGCAATGAAATGAGAAGAGGCATTTCAGGAGGCCAAAAGAAACGAGTAACCATTGGAGAGATGCTAGTTAGCTTTGCAAGAAGTTTCTTTATGGATGACATATCAACTGGCCTCGATAGCTCCACCACCTATATGATCATCAAGTTTCTAAGGCAAATAGCACATATAATGGATACCACAATAATTATTTCCTTACTCCAACCATCACCTGAAACTTTTGAGTTATTCGATGACATAATTTTATTATGCCAAGGGCATATTGTCTATCAAGGCCATCGAGAGAATGCACTTGAGTTTTTTAACTTCATGGGATTCAAATGCCCTGATAGAAAGAATGTTGCTGACTTCCTACAAGAGGTGACTTCAAAAATGGATCAAAAACAGTATTGGAATGATAAACAAAGGGAATATCAGTACTTGCCTGTGGAAAAATTTGTAGAATCCTTTCAGTGCTATTTTCTGGACCAGCACCTAATAGACAAACAGCTTATAACTGAAGGCGATGCCGAGAGCAAGATCGCAATAGCAATCAGTGAGAATTTCAGTATCTCAAACTGGAAGGTGTTAAAAGCATGCTTTTCAAGGGAAGTGTTACTAATGAAGAGGAACTCCCCAGTGCACATATTCAAGAGCATACAAATAATAATACTTGCTGTGGTAACCATGACACTGTTTCTTCGAACAAATATGGGTCATCACTCAATAGCAAGTGGAAATAAGTTTTTTGGAGCTATCGTTGCTGGAGTAGTGACAGTAAAGTTCAATGGAATGACGGAGCTGTCAATGATAGTAAAGAGAATACCTGTTTTTTACAAGCAAAGGGAGCTCTTGCACTTTCCAGGATGGGCTCTTGTTTTTTCAATTTATATATTAAACCTCCCAATGACACTGATTGAAACAGGCATATGGACATCCCTAACATATTTTGTCATTGGATATGCACCTTCAACCAGTAGGTTTTTTCTGCAGTACCTGGCATTTTTTTGTGTGCACCAAATGTCAATGGGTCTTTTCCGTTTGATTGCTGCTATTGGGAAAACTCAGATGATGGCTACCACACTAGCCACTACAACACTTATTGCAGTTTACATTCTGGGAGGGTTTGTGATATCCAAAGATAACATCCAACCATGGCTGAAGTGGGGTTATTATTCATCGCCTCTGACATATGGACTAAATGCAGTAGCACTAAATGAATTTCTGGATGAAAGGTGGACCAACACAATGTATGATGACAACGTTAACAACAGCACTGAAACTGTTGGTGGGGCTATTCTCAGATCAAGAGGTTTGTTCACTCGGTGGGCCTGGTATTGGATTTCTGTAGGCACATTAATTGGCTTCTCAATAATATTTAACATACTTACAATCATTGCCTTGGAGTATAGCAACAATCCATACAAATATAATGTTACCATCAGTACTGAAGTTGAGGACCTTCAGTCTAGTAAGAAAATTAATGAAGAAAATCAACATGGAAACGTGTTAACTGCTTTGCCATTTAAGCCGCTTAACGTTGCATTCCACCATATTAGCTATTATGTAGACATACCAAAGGAAATGATGAACGATGTGAGGAATGTTAAGAGACTTCAGCTGCTAAAAGATGTCAGTGGTGCTTTCAAGCCAGGCATTCTAACCATGCTAATGGGGGTCACAGGAGCAGGGAAAACAACACTGCTAGATGTTTTAGCCGGAAGAAAAACTGGGGGGTTCATTGAAGGAAATATTAGTATATCTGGTTACCCTAAAAAACAAGAAACATTTGCCCGGATCTCGGGATACTGTGAACAGACAGACGTTCACTCTCCGTTTCTCACAGTTTATGAATCCCTGCAGTTATCAGCATGGTTACGTCTTCCATCTCATGTTAAACAGAATAACAAAAATATGTTTGTGGAAGAAATGATGTACTTGGTTGAACTACTACCTCTGAAGGAAACCATAGTAGGTATTCCAGGAGGCAATGGTTTATCGGCTGAACAGAGAAAAAGGCTCACAATTGCAGTGGAGTTGGTTGCCAGTCCTTCCATTATTTTCATGGATGAGCCCACTACAGGTTTGGATGCTCGAGCTGCTGCATTAGTTATGAGGACCGTCAGAAAGACAGTAGACACAGGACGTACAGTTATTTGTACTATCCATCAACCAAGCATTGAAATAATTGAAGGTTTTGATGAGTTACTGTTAATGAAAAAGGGAGGACAGCTTATATACAATGGGCCCTTGGGTTCTCTTTCTCAGGCAATGATCAATTACTTTGAGGCCATCCCAGGAGTACCCAAGATCAGAAAAGGTCAGAATCCAGCAGCATGGGTAATGGATGTTACATCAGCTATCATGGAATATAATCTTCACATAGATTATGCAGACATCTACCACAGTTCTTCTCTATACAAAGAAAACATAGAGATGATTGAGGAACTGAGTAAAAGGCAACCAAATTATGAGGAACTTAAATTCCTCACAGCTCAAGGTTTGAATTTTAAAATGCAGTGCTTAGCATGTTTGTGGAAACAGCATAGGTCATATTGGAAAAATCCAAAACACAATATCGTGCGTTTCATTACCACTATCATAATTTCATTACTTTATGGTGCCGTCTTTTGGAAGATCGGTTCAAAAATGACTACGGAGCAAGATATCTTCAACGTTCTAGGAATCATGTATGCATCAGCGTTATTTCTAGGTTTTATAAATGCCAACATAGTGCAGCCTGTCGTGGGGGCAGAAAGAACTGTACTTTATCGGGAAAGATCAGCTGGAATGTATTCATCTCTGCCCTATGCAATTGCTCAGGTGGCAATTGAAATTCCATATATAATAGTTCAAGTACTCATCTTTTCAAGTACAGTGTACACAATGGCAGGATTTCAGTTGACCGTCTCTAAGTTCCTATGGTTTGTGCTTTTCATCTTATTAAGCAACGTATATTTTACACTTTTTGGGATGATGGCTGTAGCACTTACGCCAATGCAAGATTTAGCTTCCCTGTTGTCCTTTCTAATCTACATCACGTGGAATCTCTTCTCCGGCTTCATGGTTCCCAGAAAGATGATACCAACCTGGTGGAGATGGTATTATTGGGCTAACCCTGCTGCCTGGACAGTTTATGGTCTAATGTTTTCCCAATTAGGGGACCGAGTTGAGTTAATCCAAATACCAGGAGAAAGAAATCAGAAAATTAAAGAGTTCCTGGATGATTACCTTGGCATACAAAGCAACAGCTTCCCAACCATTATAGCCCTCCACTTGGGAATTATTGTTCTCTTTATCATTTTGTTTGTTGTTGGAATAAAACATCTAAACTTCCTAAGGAAATGATGGAAGAATAAATTGAAACAAAAGAGAACAATCATATCAAGTACTCCAAGCATAACTATTTTTAACTGAAATTTTATGTAGAAAAATATCATTTAGC

Network for GWHGAAEX004835

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	2	172	3.00E-13
PF01061.23	ABC2_membrane	328	539	7.90E-37
PF08370.10	PDR_assoc	554	611	2.40E-21
PF00005.26	ABC_tran	673	824	2.20E-18
PF01061.23	ABC2_membrane	971	1183	5.20E-54

Protein Sequence

>GWHPAAEX004835
MTLILGPPGSGKSTFMKALSGKLDPSLKTNGNVTFNDQELKCFTSEQLCVYVSQEDVHHAEMTVRDTLDFASCMFGTNKAFGKLIQFLLHLYARKNKKNQNLFNNSYTSNIYNAQFYKRLLCFSYHQVLGLEDCANVIIGNEMRRGISGGQKKRVTIGEMLVSFARSFFMDDISTGLDSSTTYMIIKFLRQIAHIMDTTIIISLLQPSPETFELFDDIILLCQGHIVYQGHRENALEFFNFMGFKCPDRKNVADFLQEVTSKMDQKQYWNDKQREYQYLPVEKFVESFQCYFLDQHLIDKQLITEGDAESKIAIAISENFSISNWKVLKACFSREVLLMKRNSPVHIFKSIQIIILAVVTMTLFLRTNMGHHSIASGNKFFGAIVAGVVTVKFNGMTELSMIVKRIPVFYKQRELLHFPGWALVFSIYILNLPMTLIETGIWTSLTYFVIGYAPSTSRFFLQYLAFFCVHQMSMGLFRLIAAIGKTQMMATTLATTTLIAVYILGGFVISKDNIQPWLKWGYYSSPLTYGLNAVALNEFLDERWTNTMYDDNVNNSTETVGGAILRSRGLFTRWAWYWISVGTLIGFSIIFNILTIIALEYSNNPYKYNVTISTEVEDLQSSKKINEENQHGNVLTALPFKPLNVAFHHISYYVDIPKEMMNDVRNVKRLQLLKDVSGAFKPGILTMLMGVTGAGKTTLLDVLAGRKTGGFIEGNISISGYPKKQETFARISGYCEQTDVHSPFLTVYESLQLSAWLRLPSHVKQNNKNMFVEEMMYLVELLPLKETIVGIPGGNGLSAEQRKRLTIAVELVASPSIIFMDEPTTGLDARAAALVMRTVRKTVDTGRTVICTIHQPSIEIIEGFDELLLMKKGGQLIYNGPLGSLSQAMINYFEAIPGVPKIRKGQNPAAWVMDVTSAIMEYNLHIDYADIYHSSSLYKENIEMIEELSKRQPNYEELKFLTAQGLNFKMQCLACLWKQHRSYWKNPKHNIVRFITTIIISLLYGAVFWKIGSKMTTEQDIFNVLGIMYASALFLGFINANIVQPVVGAERTVLYRERSAGMYSSLPYAIAQVAIEIPYIIVQVLIFSSTVYTMAGFQLTVSKFLWFVLFILLSNVYFTLFGMMAVALTPMQDLASLLSFLIYITWNLFSGFMVPRKMIPTWWRWYYWANPAAWTVYGLMFSQLGDRVELIQIPGERNQKIKEFLDDYLGIQSNSFPTIIALHLGIIVLFIILFVVGIKHLNFLRK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.170
SRP064423	SRR2545915	Juvenile tuber	1.800
SRP108465	SRR5643513	five period of Gastrodia elata	1.410
	SRR5643514	five period of Gastrodia elata	1.760
	SRR5643515	five period of Gastrodia elata	1.280
	SRR5643524	five period of Gastrodia elata	1.930
	SRR5643525	five period of Gastrodia elata	0.240
	SRR5643528	five period of Gastrodia elata	0.060
	SRR5643658	five period of Gastrodia elata	0.180
	SRR5643659	five period of Gastrodia elata	0.300
	SRR5643660	five period of Gastrodia elata	0.220
	SRR5643661	five period of Gastrodia elata	0.050
	SRR5643662	five period of Gastrodia elata	0.170
	SRR5643663	five period of Gastrodia elata	0.110
	SRR5643664	five period of Gastrodia elata	0.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.780
SRP279888	Gastro	Gastrodia elata tuber	0.11
	Juven	Juvenile tuber	0.26
	Mother_Gastro	Mother tuber of Gastrodia elata	0.22
	Mother_Juven	Mother tuber of Juvenile	0.22