Detail information of GWHGAAEX004840/evm.TU.scaffold_155.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479130632|ref|YP_005070592.1| | 6.00E-171 | arginine decarboxylase [Arthrospira platensis NIES-39] |
| nr | gi|743881777|ref|XP_010908989.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: arginine decarboxylase-like [Elaeis guineensis] |
| Swissprot | tr|O23141|SPE2_ARATH | 0 | Arginine decarboxylase 2 |
| trEMBL | tr|F6I184|F6I184_VITVI | 0 | Arginine decarboxylase {ECO:0000256|RuleBase:RU003740} |
| TAIR | AT4G34710 | 0 | arginine decarboxylase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000152 | 499157 | 501268 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004840
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02784.15 | Orn_Arg_deC_N | 144 | 399 | 1.30E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01583 | E4.1.1.19 | Metabolic pathways | map01100 |
| Arginine and proline metabolism | map00330 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008295 | Biological Process | spermidine biosynthetic process |
| GO:0006527 | Biological Process | arginine catabolic process |
| GO:0008792 | Molecular Function | arginine decarboxylase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 72.990 |
| SRR2545915 | Juvenile tuber | 124.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 134.360 |
| SRR5643514 | five period of Gastrodia elata | 166.200 | |
| SRR5643515 | five period of Gastrodia elata | 161.050 | |
| SRR5643524 | five period of Gastrodia elata | 124.840 | |
| SRR5643525 | five period of Gastrodia elata | 315.850 | |
| SRR5643528 | five period of Gastrodia elata | 203.480 | |
| SRR5643658 | five period of Gastrodia elata | 354.200 | |
| SRR5643659 | five period of Gastrodia elata | 441.170 | |
| SRR5643660 | five period of Gastrodia elata | 496.230 | |
| SRR5643661 | five period of Gastrodia elata | 503.320 | |
| SRR5643662 | five period of Gastrodia elata | 325.330 | |
| SRR5643663 | five period of Gastrodia elata | 219.320 | |
| SRR5643664 | five period of Gastrodia elata | 531.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 227.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 195.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 297.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 182.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 234.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 164.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 222.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 207.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 164.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 312.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 249.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 249.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 266.03 |
| Juven | Juvenile tuber | 167.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 94.68 | |
| Mother_Juven | Mother tuber of Juvenile | 56.32 |