Detail information of GWHGAAEX004842/evm.TU.scaffold_155.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17451.00E-94Histones H3 and H4
nrgi|565461548|ref|XP_006288773.1|7.96E-93hypothetical protein CARUB_v10002094mg, partial [Capsella rubella]
Swissprottr|Q71H73|H33_VITVI4.00E-95Histone H3.3
trEMBLtr|D7M3K5|D7M3K5_ARALL4.00E-93Histone H3 {ECO:0000256|RuleBase:RU004471}
TAIRAT5G109801.00E-94Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000152655347658528+
Transcript Sequence

Network for GWHGAAEX004842

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone11328.40E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms162.560
SRR2545915Juvenile tuber105.050
SRP108465SRR5643513five period of Gastrodia elata181.400
SRR5643514five period of Gastrodia elata227.350
SRR5643515five period of Gastrodia elata195.420
SRR5643524five period of Gastrodia elata207.020
SRR5643525five period of Gastrodia elata342.780
SRR5643528five period of Gastrodia elata377.270
SRR5643658five period of Gastrodia elata327.110
SRR5643659five period of Gastrodia elata122.960
SRR5643660five period of Gastrodia elata116.740
SRR5643661five period of Gastrodia elata126.470
SRR5643662five period of Gastrodia elata115.720
SRR5643663five period of Gastrodia elata108.140
SRR5643664five period of Gastrodia elata111.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1175.090
SRR6049655Rhizomagastrodiae_C368-T10_good_1151.940
SRR6049656Rhizomagastrodiae_C368-T07_good_1202.730
SRR6049657Rhizomagastrodiae_C368-T07_good_1190.210
SRR6049658Rhizomagastrodiae_C368-T04_good_1186.590
SRR6049659Rhizomagastrodiae_C368-T04_good_1199.580
SRR6049660Rhizomagastrodiae_C368-T01_good_1189.030
SRR6049661Rhizomagastrodiae_C368-T04_good_1176.060
SRR6049662Rhizomagastrodiae_C368-T01_good_1204.920
SRR6049663Rhizomagastrodiae_C368-T01_good_1181.070
SRR6049664Rhizomagastrodiae_C368-T10_good_1251.020
SRR6049665Rhizomagastrodiae_C368-T10_good_1251.020
SRP279888GastroGastrodia elata tuber 112.65
JuvenJuvenile tuber130.09
Mother_GastroMother tuber of Gastrodia elata 333.36
Mother_JuvenMother tuber of Juvenile 158.34