Detail information of GWHGAAEX004876/evm.TU.scaffold_155.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 4.00E-79 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|672167714|ref|XP_008803829.1| | 4.64E-97 | PREDICTED: homeobox-leucine zipper protein HAT4 [Phoenix dactylifera] |
| Swissprot | tr|P46602|HAT3_ARATH | 1.00E-79 | Homeobox-leucine zipper protein HAT3 |
| trEMBL | tr|A0A0A0L6T6|A0A0A0L6T6_CUCSA | 2.00E-92 | Uncharacterized protein {ECO:0000313|EMBL:KGN55846.1} |
| TAIR | AT3G60390 | 4.00E-79 | homeobox-leucine zipper protein 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000152 | 2459493 | 2460769 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004876
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04618.11 | HD-ZIP_N | 79 | 113 | 7.10E-07 |
| PF00046.28 | Homeobox | 140 | 194 | 7.60E-16 |
| PF02183.17 | HALZ | 196 | 230 | 2.40E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.770 |
| SRR2545915 | Juvenile tuber | 14.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.170 |
| SRR5643514 | five period of Gastrodia elata | 43.440 | |
| SRR5643515 | five period of Gastrodia elata | 59.600 | |
| SRR5643524 | five period of Gastrodia elata | 46.940 | |
| SRR5643525 | five period of Gastrodia elata | 10.890 | |
| SRR5643528 | five period of Gastrodia elata | 18.470 | |
| SRR5643658 | five period of Gastrodia elata | 29.960 | |
| SRR5643659 | five period of Gastrodia elata | 82.230 | |
| SRR5643660 | five period of Gastrodia elata | 80.460 | |
| SRR5643661 | five period of Gastrodia elata | 75.050 | |
| SRR5643662 | five period of Gastrodia elata | 68.330 | |
| SRR5643663 | five period of Gastrodia elata | 52.090 | |
| SRR5643664 | five period of Gastrodia elata | 28.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 53.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 49.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 48.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.41 |
| Juven | Juvenile tuber | 48.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 60.26 | |
| Mother_Juven | Mother tuber of Juvenile | 64.27 |