Detail information of GWHGAAEX004883/evm.TU.scaffold_156.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|22297811|ref|NP_681058.1|1.00E-65nucleoside diphosphate kinase [Thermosynechococcus elongatus BP-1]
KOGKOG08884.00E-85Nucleoside diphosphate kinase
nrgi|743877071|ref|XP_010907769.1|1.79E-97PREDICTED: nucleoside diphosphate kinase 2, chloroplastic-like [Elaeis guineensis]
Swissprottr|Q852S5|NDK2_TOBAC2.00E-96Nucleoside diphosphate kinase 2, chloroplastic (Precursor)
trEMBLtr|M0U940|M0U940_MUSAM2.00E-95Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}
TAIRAT5G633104.00E-85nucleoside diphosphate kinase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001606210188817-
Transcript Sequence

Network for GWHGAAEX004883

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00334.18NDK932261.40E-52
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00940ndk, NME Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Purine metabolismmap00230
Pyrimidine metabolismmap00240
Drug metabolism - other enzymesmap00983
MAPK signaling pathway - plantmap04016

Gene Ontology

GO term OntologyName
GO:0006228Biological ProcessUTP biosynthetic process
GO:0006183Biological ProcessGTP biosynthetic process
GO:0006241Biological ProcessCTP biosynthetic process
GO:0006165Biological Processnucleoside diphosphate phosphorylation
GO:0004550Molecular Functionnucleoside diphosphate kinase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.750
SRR2545915Juvenile tuber14.250
SRP108465SRR5643513five period of Gastrodia elata17.090
SRR5643514five period of Gastrodia elata19.830
SRR5643515five period of Gastrodia elata15.930
SRR5643524five period of Gastrodia elata15.120
SRR5643525five period of Gastrodia elata14.750
SRR5643528five period of Gastrodia elata11.600
SRR5643658five period of Gastrodia elata11.910
SRR5643659five period of Gastrodia elata18.140
SRR5643660five period of Gastrodia elata17.790
SRR5643661five period of Gastrodia elata16.570
SRR5643662five period of Gastrodia elata17.400
SRR5643663five period of Gastrodia elata18.100
SRR5643664five period of Gastrodia elata13.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.900
SRR6049655Rhizomagastrodiae_C368-T10_good_117.180
SRR6049656Rhizomagastrodiae_C368-T07_good_113.380
SRR6049657Rhizomagastrodiae_C368-T07_good_19.580
SRR6049658Rhizomagastrodiae_C368-T04_good_19.600
SRR6049659Rhizomagastrodiae_C368-T04_good_17.920
SRR6049660Rhizomagastrodiae_C368-T01_good_113.160
SRR6049661Rhizomagastrodiae_C368-T04_good_114.420
SRR6049662Rhizomagastrodiae_C368-T01_good_117.600
SRR6049663Rhizomagastrodiae_C368-T01_good_116.410
SRR6049664Rhizomagastrodiae_C368-T10_good_119.570
SRR6049665Rhizomagastrodiae_C368-T10_good_119.570
SRP279888GastroGastrodia elata tuber 16.63
JuvenJuvenile tuber14.66
Mother_GastroMother tuber of Gastrodia elata 9.43
Mother_JuvenMother tuber of Juvenile 10.02